write this in pymol command window:

import sys
print sys.path

There you can see where pymol is looking.

Or you can this to your .pymolrc in your home folder:

import sys
sys.path.append("/Path/to/your/Pymol-script/modules")

Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
Mobil:
+45 60210234



2012/5/15 Boris Kheyfets <kheyfboris@gmail.com>
Is there a way I can add a path to 'run' - so not to type the full
path to the script when I run it:

run /path/to/script.py

------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net