Hi all

I have to measure a distance between one  atom in one molecule (object) and second atom in many molecules (objects) - to do so interactively there is no problem:
distance MODEL1//A/211/CA , ManyMODELS_*///100/CA. 
How can I write a script  that will help to get the list of the distances. Any hints will be appreciated

Thank You
Rotem Sertchook

Rotem Sertchook, Ph.D.
Bioinformatics Unit, Biological Services
Weizmann Institute of Science,
Rehovot 76100, Israel.