Thanks Robert

Can you please give out some examples on how to use them?
Please give out some appropriate links for stride and dssp

Thanks again!

Best
Anna


From: robert.fenwick@irbbarcelona.org
Date: Sat, 20 Aug 2011 08:49:56 +0200
Subject: Re: [PyMOL] Secondary Structure Element from a PDB file
To: annajamesmatrix@hotmail.com

Stride or dssp will do this

Enviado desde mi iPod

El 20/08/2011, a las 08:33, Anna James <annajamesmatrix@hotmail.com> escribió:

Is there any program/code/software which can give me the secondary structure region in a given PDB file ?

like :
./ executable pdb1.pdb
answer would be :

alpha helical : 1- 8 residues
beta sheet : 17-29 residues
etc... so on


OR can this be done in Pymol ,I tried using dss but I guess it's purpose in quiet entirely different
Please advise
I have large number of PDBs of my long protein and need to analyze this secondary structure content in them and is looking for some small C or Python Code/Binary for it.

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