Tsjerk,

You are correct that the PSF file only has that information.  I should have mentioned that I plan to load a simulation trajectory file (DCD) into this PSF/PyMOL object.

Thanks

Sean


Date: Wed, 7 Dec 2011 18:28:28 +0100
Subject: Re: [PyMOL] Reading Protein Structure File (PSF)
From: tsjerkw@gmail.com
To: magicmen@hotmail.com
CC: pymol-users@lists.sourceforge.net

Hi Sean,
The .psf file format is for a topological desription (bonds, angles, etc), not for coordinates afaik.
Cheers,
Tsjerk

On Dec 7, 2011 6:25 PM, "Sean Law" <magicmen@hotmail.com> wrote:

Hi PyMOLers,

Can anybody tell me if there's a way to read in a protein structure file (PSF).  This is a common file format in simulation programs such as CHARMM and NAMD and basically gives similar information to the PDB file.

Any suggestions would be greatly appreciated.

Thank you for your time.

Sean

------------------------------------------------------------------------------
Cloud Services Checklist: Pricing and Packaging Optimization
This white paper is intended to serve as a reference, checklist and point of
discussion for anyone considering optimizing the pricing and packaging model
of a cloud services business. Read Now!
http://www.accelacomm.com/jaw/sfnl/114/51491232/
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net