Hello Pymol Users
I am quite new to python and more specifically to PYTHON ,PYMOL interface hence I urgently need a help from you.
I simple need to calculate the RMSD between two pdb files and use that rmsd for further programming but somehow I can not figure how to do it
This is what I have written till now
[codes are in bold]
from pymol import cmd
This I believe should just load in the PDBs through PYMOL [both these pdbs are in the same directory]
rms=cmd.fit(pdb ???? ) so I do not know how to get the RMSD using this function ( I need for CA atoms only)
This is the only part where I am getting jammed . I only need the RMSD values between the structures(without any changes to the structures)
Can you advise me further on this one ?
Any help would be appreciated.