Hi Yamei,

You'll need to apply the matrix used in super-positioning one structure over another to the corresponding maps, so that the maps will move with the structure.

The command matrix_copy may be used to do this.
http://www.pymolwiki.org/index.php/Matrix_Copy

--Subhangi


On Mon, Apr 18, 2011 at 3:24 PM, Yamei Yu <ymyuxtal@gmail.com> wrote:
Dear all,

 In pymol we can superimpose two structures together,and if we want to display the map at the same time, the moving structure will fit the its original map any more, so how to superimpose the maps at the time?
Thank you very much!
yamei yu

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