Hi Vaheh,

 

my recollection is a bit hazy, but I remember having some issues with the distributed APBS version earlier this year. Try downloading the latest APBS and run the plug-in generated input file using the latest version from the commandline. If that works you may have to swap the APBs binary or adjust the path to APBS accordingly.

 

HTH

               

                Carsten

 

From: Oganesyan, Vaheh [mailto:OganesyanV@MedImmune.com]
Sent: Tuesday, April 22, 2014 9:45 AM
To: pymol-users
Subject: [PyMOL] regarding APBS tools in PyMOL

 

Colleagues,

 

The latest PyMOL version 1.7.0.3 looks like having issues with molecule size when APBS is being used. I’m loading whole molecule consisting of ~500 aa and APBS plugin after setting up the grid and after starting APBS run few seconds later opens a window with message: APBS stopped working. Close Program. If I load a portion of the molecule (and it doesn’t matter which, but should be less than 200 aa) then it works fine.

It is being run on Intel Core i7, 64-bit with 8 GB RAM.

Did anyone see such behavior?

 

Regards,

 

Vaheh

8-5851

 

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