Hi jpd,


try running APBS directly just using the .in file generated from a failed run. That may provide a clue as to where the problem is, i.e. within APBS itself or within the plugin. If it is APBS, which is throwing the error you may want to try to grab an updated version or the source code to compile yourself.






From: jp d [mailto:yoyoq@yahoo.com]
Sent: Tuesday, February 11, 2014 2:52 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] apbs plugin



anyone else having trouble with the apbs plugin?

i keep crashing as soon as i try to do anything.

if i select 'Choose externally generated PQR'

or 'run APBS' i get this

In show error 1
alloc: invalid block: 0x2aaaac29fb78: 0 0


this is with pymol 1.7
ubuntu 12.04

using 1FAS fetched from the pdb