Hi Jim,
 
B all by itself is a selection language keyword for the b-factor property:
 
select high_b_factor, b > 50
 
So just use a different selection name:
 
select chB, chain B
 
Cheers,
Warren

 

From: Jim Remington [mailto:remington@molbio.uoregon.edu]
Sent: Tue 6/2/2009 2:08 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Selection/remove bug?

Dear All:

One of our crystals contains a dimer in the asymmetric unit, with chains
labeled A and B.
If I want to display chain b, I can first select chain a and remove the
atoms, using the commands:

select a, chain a
( (a) action menu: remove atoms)
Result: atoms removed

However, if after beginning anew or otherwise, I want to display chain
a, the same commands fail.

select b, chain b
( (b) action menu: remove atoms)

Result:
Selector-Error: Malformed selection.
( b )<--

Any advice would be appreciated!

Thanks, Jim

------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net