You are correct that PyMOL cannot properly
handle structures which do not have unique names within a given residue. The
“rename” command will make sure all atoms are unique identified:
fragment arg, myobj
Sent: Tuesday, January 06, 2009
Subject: [PyMOL] Updating
I try to write a script able to reorient a protein
and to save (in a pdb format) the reoriented structure.
have a problem during the saving phase of my script.
When I use the update
function some atoms are not tacken into account. Typically, if several atoms
have the same name (for example HB of a sidechain) only the first one is
updated. This leads to a final wrote structure with a series of atoms badly
Do you have any idea to solve this problem ?
Thank you for your help