I am trying to use pymol to view the pes for an RNA-Protein complex.

But, I want to use two different dx maps: one for RNA and one for the protein.

Here is what I did:

1) I read into pymol the pdb file for the entire RNA-protein complex.  It looks good.

2) I then read in a protein.dx map hoping that it would overlap with the protein segment.  It didn't work.

Can someone please help me with this?

The reason for the two pes maps is that the RNA and protein have different characteristics, and I want to manipulate them separately.

Thanks for all your help in advance.

Kind regards,