Thanks for kind advices.
Whatif and PISA worked excellently, but I want to get the list within Pymol.
By parsing the pymol modules, I found
hb = cmd.find_pairs("((byres "+sss1+") and n;n)",
"((byres "+sss1+") and n;o)",mode=1,
in util.py. Is it possible to get a list of main-chain hydrogen bonds with this function?
Any suggestions and advices are welcomed.
Thanks in advance.