I am getting quite desperate! For some strange reason PyMol do not display certain areas (several loops) of my .pdb file (1DAN) when in cartoon display mode. When I display the structure in "lines" or "sticks" everything is ok. Other pdb-viewers dont have this problem with the same .pdb file. I have tried several things:
1. Upgraded to the newest version og PyMol.
2. Redefined secondary structure using the "alter" command.
3. Imported the .pdb file into SwissViewer, saved as the imported structure as a .pdb file, and then imported into PyMOl.
None of these things have solved the problem. Help please! (I would hate to have to start using another pdb-viewer!!) Cheers Kasper