I have an unique problem with pairfitting, My Protein  is comprised of helices and loops,
In active and inactive forms there are no changes in helical structures, but only loops orientation are changed
after pairfitting, one the structure is shifted about 0.5 angstroms,
Is there any command to shift the 0.5 angstroms of one structure, so I that I can see both
PDB structures as one uniform helix with disoriented loops in active and inactive form,

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