Hi everybody,
I have a problem when i create a png,
after making some changes to the protein file( selecting one part of the aminoacid and overimposing the catoon) I esecute this script
ray 487,542
png Lhalf.png, dpi=300
and i got something UGLY (cartoon is not present in the final picture and the border of the selected aminoacids are black and not continous)
but when i run the same script on another protein conformation (prepared in the same way) i got extly what i want (NICE selected part with the cartoon in grey evident in trasparence)
where is the mistake?

Mr. Cosimo Bonettiselected
Section of Biophysics
Vrije Universiteit Amsterdam
De Boelelaan 1081
1081 HV, Amsterdam The Netherlands
Room: S1.48
Phone: +31(0)20 598 7932
Fax : +31 (0)20 598 7999
E-mail : cbonetti@nat.vu.nl

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