Hi David,

Which character?

I did a copy and paste, from Pymol's Script Library, into Mac's Text Editor, and saved it as a txt file.

Many thanks,

M.A.

Sent from my iPad

On 13 Jul 2013, at 17:26, David Hall <lists@cowsandmilk.net> wrote:

your file has a weird non-ASCII character on line 5, causing the syntax error it mentions on line 5. Actually, your file has such characters on a whole bunch of lines (5, 37, 40, 45, 53, 54, 59, 61, 63, 64). Not sure how they were added, but if you delete them, then your file runs. If you provide more details on how you made your file, people may be able to tell you how to avoid the problem.

-David

On Saturday, July 13, 2013 at 9:31 AM, Muhtari Adanan wrote:



Dear Group,

I am a complete novice, thus hoped you would provide guidance on using Pymol Scripts.

When trying to run the above script, from Pymol's Script Library, on my macpymol, i get the following error message - attached below is the findSurfaceResidues.txt script.

PyMOL>run findSurfaceResidues3
Traceback (most recent call last):
  File "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", line 338, in parse
  File "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py", line 455, in run_file
IOError: [Errno 2] No such file or directory: 'findSurfaceResidues3'
PyMOL>run findSurfaceResidues3.txt
Traceback (most recent call last):
  File "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", line 338, in parse
  File "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py", line 455, in run_file
  File "findSurfaceResidues3.txt", line 5
     
     ^
 SyntaxError: invalid syntax


Where am I, going astray?

M.A. 

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Attachments:
- findSurfaceResidues3.txt