Sorry, PyMOL can only compute rmsds on pairs of structures, not ensembles.
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From: [] On Behalf Of Marcela NUNEZ
Sent: Wednesday, January 03, 2007 6:46 AM
Subject: [PyMOL] rmsd calculation of homologous structures

Hello everybody!
I would like to calculate the backbone atoms rmsd of homologous structures (more than two structures at the time), selecting for each one the structured region.
Command as fit, rms, pair_fit do it only for pair of structures. Does Pymol has the possibility to do rmksd calculation for up to 2 structures at the same time???

Thanks for your help

Marcela Nunez
TÚl: + 33 (0)

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