I have a problem. I load the pdb file and than use the command "create" to divide the molecule into smaller parts. The objects are created, however some small parts are missing, giving an effect of holes in the structure, or that pieces of molecule are separated from the main part. I need to create the objects in order to split the molecule in half in a movie. I tried to use "hide" and "show" and then "translate" to obtain the same splitting effect, but there's also a problem by that, because I cannot put the molecule back together for playing the movie continuously, even if I perform the same steps I did for splitting it. What can I do to avoid losing parts of the molecule by "create" command? I use Python to make the movie by the way.
Could anyone help me?