This error:
creating /usr/local/lib/python2.6
error: could not create '/usr/local/lib/python2.6': Permission denied

Means that you must run the compilation command as root (or with su privileges)
The command:
python setup.py build install
Can be decomposed into:
python setup.py build (this part has been completed in your case)
and:
python setup.py install (here it fails!). In this case you must have superuser privileges, try:
sudo python setup.py install
Or, if you don't have sudo on yout system, become root and execute the command as root.

Hugo

2010/3/22 Tatsiana Kirys <nushki@mail.ru>

i dont know why i'm so helpless, but i still got a bunch of messengees:

running build
running build_py
running build_ext
building 'pymol._cmd' extension
g++ -pthread -shared build/temp.linux-i686-2.6/modules/cealign/src/ccealignmodule.o build/temp.linux-i686-2.6/ov/src/OVContext.o build/temp.linux-i686-2.6/ov/src/OVHeapArray.o build/temp.linux-i686-2.6/ov/src/OVHeap.o build/temp.linux-i686-2.6/ov/src/OVLexicon.o build/temp.linux-i686-2.6/ov/src/OVOneToOne.o build/temp.linux-i686-2.6/ov/src/OVOneToAny.o build/temp.linux-i686-2.6/ov/src/OVRandom.o build/temp.linux-i686-2.6/ov/src/ov_utility.o build/temp.linux-i686-2.6/layer0/Block.o build/temp.linux-i686-2.6/layer0/Crystal.o build/temp.linux-i686-2.6/layer0/Debug.o build/temp.linux-i686-2.6/layer0/Deferred.o build/temp.linux-i686-2.6/layer0/Err.o build/temp.linux-i686-2.6/layer0/Feedback.o build/temp.linux-i686-2.6/layer0/Field.o build/temp.linux-i686-2.6/layer0/Isosurf.o build/temp.linux-i686-2.6/layer0/Map.o build/temp.linux-i686-2.6/layer0/Match.o build/temp.linux-i686-2.6/layer0/Matrix.o build/temp.linux-i686-2.6/layer0/MemoryDebug.o build/temp.linux-i686-2.6/layer0/MemoryCache.o build/temp.linux-i686-2.6/layer0/MyPNG.o build/temp.linux-i686-2.6/layer0/Parse.o build/temp.linux-i686-2.6/layer0/Pixmap.o build/temp.linux-i686-2.6/layer0/Queue.o build/temp.linux-i686-2.6/layer0/Raw.o build/temp.linux-i686-2.6/layer0/Sphere.o build/temp.linux-i686-2.6/layer0/Tetsurf.o build/temp.linux-i686-2.6/layer0/Texture.o build/temp.linux-i686-2.6/layer0/Tracker.o build/temp.linux-i686-2.6/layer0/Triangle.o build/temp.linux-i686-2.6/layer0/Util.o build/temp.linux-i686-2.6/layer0/Vector.o build/temp.linux-i686-2.6/layer0/Word.o build/temp.linux-i686-2.6/layer0/os_gl.o build/temp.linux-i686-2.6/layer1/Basis.o build/temp.linux-i686-2.6/layer1/ButMode.o build/temp.linux-i686-2.6/layer1/Character.o build/temp.linux-i686-2.6/layer1/CGO.o build/temp.linux-i686-2.6/layer1/Color.o build/temp.linux-i686-2.6/layer1/Control.o build/temp.linux-i686-2.6/layer1/Extrude.o build/temp.linux-i686-2.6/layer1/Font.o build/temp.linux-i686-2.6/layer1/FontType.o build/temp.linux-i686-2.6/layer1/FontGLUT.o build/temp.linux-i686-2.6/layer1/FontGLUT8x13.o build/temp.linux-i686-2.6/layer1/FontGLUT9x15.o build/temp.linux-i686-2.6/layer1/FontGLUTHel10.o build/temp.linux-i686-2.6/layer1/FontGLUTHel12.o build/temp.linux-i686-2.6/layer1/FontGLUTHel18.o build/temp.linux-i686-2.6/layer1/Movie.o build/temp.linux-i686-2.6/layer1/Ortho.o build/temp.linux-i686-2.6/layer1/P.o build/temp.linux-i686-2.6/layer1/PConv.o build/temp.linux-i686-2.6/layer1/Pop.o build/temp.linux-i686-2.6/layer1/PyMOLObject.o build/temp.linux-i686-2.6/layer1/Ray.o build/temp.linux-i686-2.6/layer1/Rep.o build/temp.linux-i686-2.6/layer1/Scene.o build/temp.linux-i686-2.6/layer1/ScrollBar.o build/temp.linux-i686-2.6/layer1/Seq.o build/temp.linux-i686-2.6/layer1/Setting.o build/temp.linux-i686-2.6/layer1/Shaker.o build/temp.linux-i686-2.6/layer1/Symmetry.o build/temp.linux-i686-2.6/layer1/Text.o build/temp.linux-i686-2.6/layer1/TypeFace.o build/temp.linux-i686-2.6/layer1/Wizard.o build/temp.linux-i686-2.6/layer1/View.o build/temp.linux-i686-2.6/layer2/AtomInfo.o build/temp.linux-i686-2.6/layer2/CoordSet.o build/temp.linux-i686-2.6/layer2/GadgetSet.o build/temp.linux-i686-2.6/layer2/DistSet.o build/temp.linux-i686-2.6/layer2/ObjectAlignment.o build/temp.linux-i686-2.6/layer2/ObjectCGO.o build/temp.linux-i686-2.6/layer2/ObjectCallback.o build/temp.linux-i686-2.6/layer2/ObjectDist.o build/temp.linux-i686-2.6/layer2/ObjectMap.o build/temp.linux-i686-2.6/layer2/ObjectMesh.o build/temp.linux-i686-2.6/layer2/ObjectMolecule.o build/temp.linux-i686-2.6/layer2/ObjectMolecule2.o build/temp.linux-i686-2.6/layer2/ObjectSurface.o build/temp.linux-i686-2.6/layer2/ObjectSlice.o build/temp.linux-i686-2.6/layer2/RepCartoon.o build/temp.linux-i686-2.6/layer2/RepCylBond.o build/temp.linux-i686-2.6/layer2/RepDistDash.o build/temp.linux-i686-2.6/layer2/RepDistLabel.o build/temp.linux-i686-2.6/layer2/RepDot.o build/temp.linux-i686-2.6/layer2/RepLabel.o build/temp.linux-i686-2.6/layer2/RepMesh.o build/temp.linux-i686-2.6/layer2/ObjectGadget.o build/temp.linux-i686-2.6/layer2/ObjectGadgetRamp.o build/temp.linux-i686-2.6/layer2/ObjectGroup.o build/temp.linux-i686-2.6/layer2/RepAngle.o build/temp.linux-i686-2.6/layer2/RepDihedral.o build/temp.linux-i686-2.6/layer2/RepNonbonded.o build/temp.linux-i686-2.6/layer2/RepNonbondedSphere.o build/temp.linux-i686-2.6/layer2/RepRibbon.o build/temp.linux-i686-2.6/layer2/RepSphere.o build/temp.linux-i686-2.6/layer2/RepEllipsoid.o build/temp.linux-i686-2.6/layer2/RepSurface.o build/temp.linux-i686-2.6/layer2/RepWireBond.o build/temp.linux-i686-2.6/layer2/Sculpt.o build/temp.linux-i686-2.6/layer2/SculptCache.o build/temp.linux-i686-2.6/layer2/VFont.o build/temp.linux-i686-2.6/layer3/PlugIOManager.o build/temp.linux-i686-2.6/layer3/Editor.o build/temp.linux-i686-2.6/layer3/Executive.o build/temp.linux-i686-2.6/layer3/Seeker.o build/temp.linux-i686-2.6/layer3/Selector.o build/temp.linux-i686-2.6/layer4/Cmd.o build/temp.linux-i686-2.6/layer4/Export.o build/temp.linux-i686-2.6/layer4/Menu.o build/temp.linux-i686-2.6/layer4/PopUp.o build/temp.linux-i686-2.6/layer5/PyMOL.o build/temp.linux-i686-2.6/layer5/TestPyMOL.o build/temp.linux-i686-2.6/layer5/main.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpng -lz -lfreetype -lpython2.6 -o build/lib.linux-i686-2.6/pymol/_cmd.so
building 'chempy.champ._champ' extension
creating build/temp.linux-i686-2.6/contrib
creating build/temp.linux-i686-2.6/contrib/champ
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/champ.c -o build/temp.linux-i686-2.6/contrib/champ/champ.o
In file included from /usr/include/python2.6/Python.h:8,
š š š š š š š š from contrib/champ/os_python.h:19,
š š š š š š š š from contrib/champ/champ.h:20,
š š š š š š š š from contrib/champ/champ.c:27:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdio.h:28,
š š š š š š š š from contrib/champ/os_std.h:23,
š š š š š š š š from contrib/champ/champ.c:17:
/usr/include/features.h:210:1: warning: this is the location of the previous definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/champ_module.c -o build/temp.linux-i686-2.6/contrib/champ/champ_module.o
In file included from /usr/include/python2.6/Python.h:8,
š š š š š š š š from contrib/champ/os_python.h:19,
š š š š š š š š from contrib/champ/champ_module.c:19:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdio.h:28,
š š š š š š š š from contrib/champ/os_std.h:23,
š š š š š š š š from contrib/champ/champ_module.c:17:
/usr/include/features.h:210:1: warning: this is the location of the previous definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/chiral.c -o build/temp.linux-i686-2.6/contrib/champ/chiral.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/err2.c -o build/temp.linux-i686-2.6/contrib/champ/err2.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/feedback2.c -o build/temp.linux-i686-2.6/contrib/champ/feedback2.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/list.c -o build/temp.linux-i686-2.6/contrib/champ/list.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/os_memory.c -o build/temp.linux-i686-2.6/contrib/champ/os_memory.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/sort.c -o build/temp.linux-i686-2.6/contrib/champ/sort.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/strblock.c -o build/temp.linux-i686-2.6/contrib/champ/strblock.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -Icontrib/champ -I/usr/include/python2.6 -c contrib/champ/vla.c -o build/temp.linux-i686-2.6/contrib/champ/vla.o
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/champ/champ.o build/temp.linux-i686-2.6/contrib/champ/champ_module.o build/temp.linux-i686-2.6/contrib/champ/chiral.o build/temp.linux-i686-2.6/contrib/champ/err2.o build/temp.linux-i686-2.6/contrib/champ/feedback2.o build/temp.linux-i686-2.6/contrib/champ/list.o build/temp.linux-i686-2.6/contrib/champ/os_memory.o build/temp.linux-i686-2.6/contrib/champ/sort.o build/temp.linux-i686-2.6/contrib/champ/strblock.o build/temp.linux-i686-2.6/contrib/champ/vla.o -L/usr/lib -lpython2.6 -o build/lib.linux-i686-2.6/chempy/champ/_champ.so
building 'pymol.opengl.glu._glu_num' extension
creating build/temp.linux-i686-2.6/contrib/pyopengl
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/_glu_nummodule.c -o build/temp.linux-i686-2.6/contrib/pyopengl/_glu_nummodule.o
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/_glu_nummodule.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/glu/_glu_num.so
building 'pymol.opengl.glu._glu' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/_glumodule.c -o build/temp.linux-i686-2.6/contrib/pyopengl/_glumodule.o
contrib/pyopengl/_glumodule.c:236: warning: šsuppress_compiler_warnings' defined but not used
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/_glumodule.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/glu/_glu.so
building 'pymol.opengl.glut._glut' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/_glutmodule.c -o build/temp.linux-i686-2.6/contrib/pyopengl/_glutmodule.o
contrib/pyopengl/_glutmodule.c: In function šglut_glutGameModeString':
contrib/pyopengl/_glutmodule.c:1149: warning: unused variable š_res'
contrib/pyopengl/_glutmodule.c: In function šglut_glutEnterGameMode':
contrib/pyopengl/_glutmodule.c:1160: warning: unused variable š_res'
contrib/pyopengl/_glutmodule.c: In function šglut_glutLeaveGameMode':
contrib/pyopengl/_glutmodule.c:1171: warning: unused variable š_res'
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/_glutmodule.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/glut/_glut.so
building 'pymol.opengl.gl._opengl_num' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/_opengl_nummodule.c -o build/temp.linux-i686-2.6/contrib/pyopengl/_opengl_nummodule.o
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/_opengl_nummodule.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/gl/_opengl_num.so
building 'pymol.opengl.gl._opengl' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/_openglmodule.c -o build/temp.linux-i686-2.6/contrib/pyopengl/_openglmodule.o
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/_openglmodule.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/gl/_opengl.so
building 'pymol.opengl.gl.openglutil' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/openglutil.c -o build/temp.linux-i686-2.6/contrib/pyopengl/openglutil.o
contrib/pyopengl/openglutil.c: In function šgl_SavePPM':
contrib/pyopengl/openglutil.c:192: warning: ignoring return value of šfwrite', declared with attribute warn_unused_result
contrib/pyopengl/openglutil.c: At top level:
contrib/pyopengl/openglutil.c:49: warning: šsuppress_compiler_warnings' defined but not used
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/openglutil.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/gl/openglutil.so
building 'pymol.opengl.gl.openglutil_num' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c contrib/pyopengl/openglutil_num.c -o build/temp.linux-i686-2.6/contrib/pyopengl/openglutil_num.o
gcc -pthread -shared build/temp.linux-i686-2.6/contrib/pyopengl/openglutil_num.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU -lglut -lpython2.6 -o build/lib.linux-i686-2.6/pymol/opengl/gl/openglutil_num.so
running install
running install_lib
creating /usr/local/lib/python2.6
error: could not create '/usr/local/lib/python2.6': Permission denied



Mon, 22 Mar 2010 10:53:05 -0400 ΠΙΣΨΝΟ ΟΤ David Hall <lists@cowsandmilk.net>:

> 2010/3/22 Tatsiana Kirys <nushki@mail.ru>:
> > I've installed it. But i have even more errors now:
> >
> > nushki@linux-3mpg:~/Download/trunk/pymol> python setup.py build install
> > ....bunch of stuff....
> > /usr/lib/gcc/i586-suse-linux/4.4/../../../../i586-suse-linux/bin/ld: cannot find -lpng
> > collect2: ld returned 1 exit status
> > error: command 'g++' failed with exit status 1
> >
>
> This is the important error, all those others are just silliness. šYou
> need libpng-devel (which should also install some other package that
> starts with libpng that has the actual library)
>
> Interestingly, the pymol README claims pymol can be compiled without
> libpng. šAssuming that isn't true any more, that probably should be
> corrected.
>
> -David
>

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