The two missing loops of the 1DAN structure when in cartoon mode are located to res. 183-189 and 220-220. Im using a standard PC with Windows 2000.

Any suggestions? A fellow collegue in my lab is having identical troubles but hes also using a PC with win2000. Its quite frustrating because the rest of the structure looks great in PyMol!

 

Cheers Kasper

 



<-----Original Message----->
    From: Joel Tyndall
Sent: 10/17/2005 12:07:00 AM
To: randkasper@icqmail.com
Subject: Re: [PyMOL] Missing parts in cartoon mode 


Hey Kasper,

which loops can't you see (amino acid nos./chain/)? what OS are you on
(OSX, PC, Linux?) I have had a look and it looks ok on windows

Cheers

J

randkasper@icqmail.com wrote:

> Hi everybody
> I am getting quite desperate! For some strange reason PyMol do not
> display certain areas (several loops) of my .pdb file (1DAN) when in
> cartoon display mode. When I display the structure in "lines" or
> "sticks" everything is ok. Other pdb-viewers dont have this problem
> with the same .pdb file. I have tried several things:
> 1. Upgraded to the newest version og PyMol.
> 2. Redefined secondary structure using the "alter" command.
> 3. Imported the .pdb file into SwissViewer, saved as the imported
> structure as a .pdb file, and then imported into PyMOl.
>
> None of these things have solved the problem. Help please! (I would
> hate to have to start using another pdb-viewer!!) Cheers Kasper
>
> _______________________________________________________________
> ICQ - You get the message, anywhere!
> Get it @ http://www.icq.com
>
>
>

--
Joel Tyndall, PhD

Lecturer
National School of Pharmacy
University of Otago
PO Box 913 Dunedin
New Zealand

Pukenga
Te Kura Taiwhanga Putaiao
Te Whare Wananga o Otago
Pouaka Poutapeta 913 Otepoti
Aotearoa

Ph / Waea +64 3 4797293
Fax / Waeawhakaahua +64 3 4797034


.

_______________________________________________________________
ICQ - You get the message, anywhere!
Get it @ http://www.icq.com