Hi Lina,

 

If you have an atom that you want to identify you can right click on the atom which give you the atom name (pdb format).

 

Your command “select o, name o” does work on the latest windows install 1.4.1 where it selects all oxygens and creates a selection called (o).

 

Hope this helps

 

Joel

 

_________________________________

Joel Tyndall, PhD

Senior Lecturer in Medicinal Chemistry
National School of Pharmacy
University of Otago
PO Box 56 Dunedin 9054
New Zealand  

Skype: jtyndall
http://www.researcherid.com/rid/C-2803-2008

Pukeka Matua
Te Kura Taiwhanga Putaiao
Te Whare Wananga o Otago
Pouaka Poutapeta 56 Otepoti 9054
Aotearoa

Ph / Waea               +64 3 4797293
Fax / Waeawhakaahua     +64 3 4797034

 

From: lina [mailto:lina.lastname@gmail.com]
Sent: Sunday, 25 September 2011 11:11 p.m.
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] get atom name

 

Hi,

how can I get the atoms name (except label)

when I use
select o, name o

not work.

Here I will the .pse file in the following email.

--
Best Regards,

lina