Hi, I'm new to pymol and I'm having a hard time with a script. This is what I wrote:
#!/bin/bash pwd echo ' fetch 1OYT remove resn HOH ' > scriptt.pml pymol scriptt.pml
But pymol returns:
/home/santi/trials-smina/web-example PyMOL(TM) 2.3.1 - Incentive Product Copyright (C) Schrodinger, LLC This Executable Build integrates and extends Open-Source PyMOL. Segmentation fault (core dumped)
Any idea what's going on and how to fix it?
-Computer specs-
Processor : AMD A12-9720P RADEON R7, 12 COMPUTE CORES 4C+8G
Memory : 7603MB (3084MB used)
Machine Type : Notebook
Operating System : Ubuntu 18.04.2 LTS
Date/Time : Fri 05 Apr 2019 19:41:04 BST
-Display-
Resolution : 1366x768 pixels
OpenGL Renderer : (Unknown)
X11 Vendor : The X.Org Foundation
-Audio Devices-
Audio Adapter : HDA-Intel - HDA ATI HDMI
Audio Adapter : HDA-Intel - HD-Audio Generic
EPSON_WF_2750_Series@EPSON85C2A6.local
HP_Deskjet_3050A_J611_series_2_Evelyn_s_MacBook_Air
-SCSI Disks-
ATA WDC WD10SPZX-24Z
HL-DT-ST DVDRAM GUE0N
UFD 2.0 Silicon-Power8G
Does it work headless?
This looks suspicious: "OpenGL Renderer : (Unknown)"
Hi Thomas, Thank you. uhmm yes but I can't open any .pdb file the only workaround was to install an older version of PyMOL and open the files with an older version (1.8)
What does PyMOL 1.8 report as "OpenGL graphics engine" and what OpenGL version does it detect?