The list is missing bin/pymol and lib/python2.7/site-packages/pymol/pymol_path/* (about 500 files).
Found this problem on FreeBSD while trying to create a package. Packaging framework uses this command:
python setup.py install --record /usr/ports/science/py-mol/work/.PLIST.pymodtmp -c -O1 --prefix=/usr/local --single-version-externally-managed --root=/usr/ports/science/py-mol/work/stage
and uses the record file as a package file list. The lists differ in the above mentioned files.
Version 1.8.6.0.
patches welcome