Multiple conformations (at least for the 'CA' atom) of a residue result in multiple instances of a residue in the saved sequence file. This only seems to occur when using the 'save file.fasta' command as opposed to saving an alignment object. E.g. load 3bow, which has two conformations of MET383 of chain A. Save 3bow.fasta and the resulting file has a sequence at that region of TFWMMNP, instead of TFWMNP
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