Python mixture package Code
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| File | Date | Author | Commit |
|---|---|---|---|
| AminoAcidPropertyPrior.py | 2010-04-06 | cic99 | [r46] fixed syntax problems |
| C_mixextend.c | 2010-03-22 | cic99 | [r42] |
| C_mixextend.h | 2009-11-19 | cic99 | [r1] |
| GPL.txt | 2009-11-19 | cic99 | [r1] |
| MANIFEST.in | 2009-11-19 | cic99 | [r1] |
| README.txt | 2010-08-27 | igcf | [r62] |
| alphabet.py | 2010-03-22 | cic99 | [r42] |
| bioMixture.py | 2010-03-22 | cic99 | [r42] |
| crp.py | 2009-11-19 | cic99 | [r1] |
| entropy_hist.py | 2009-11-19 | cic99 | [r1] |
| fullEnumerationExhaustive.py | 2009-11-19 | cic99 | [r1] |
| mix.m | 2009-11-19 | cic99 | [r1] |
| mixture.py | 2011-09-19 | igcf | [r91] |
| mixtureBinomial.py | 2009-11-19 | cic99 | [r1] |
| mixtureHMM.py | 2009-11-19 | cic99 | [r1] |
| mixtureHMMunittests.py | 2009-11-19 | cic99 | [r1] |
| mixtureLinearGaussian.py | 2011-09-14 | igcf | [r88] |
| mixtureunittests.py | 2010-10-04 | igcf | [r66] |
| mult.m | 2009-11-19 | cic99 | [r1] |
| plotMixture.py | 2010-03-22 | cic99 | [r42] |
| plotmix.m | 2009-11-19 | cic99 | [r1] |
| randomMixtures.py | 2009-11-19 | cic99 | [r1] |
| setPartitions.py | 2009-11-19 | cic99 | [r1] |
| setup.py | 2012-07-27 | jonshao | [r92] fixed 2.7 distutils bug |
| struct_eval.py | 2009-11-19 | cic99 | [r1] |
| test.R | 2009-11-19 | cic99 | [r1] |
| test.py | 2010-03-22 | cic99 | [r42] |
| test.txt | 2009-11-19 | cic99 | [r1] |
| test_datareader.py | 2009-11-19 | cic99 | [r1] |
| test_dim.py | 2009-11-19 | cic99 | [r1] |
| test_dim2.py | 2009-11-19 | cic99 | [r1] |
| test_dim3.py | 2009-11-19 | cic99 | [r1] |
| test_dim4.py | 2009-11-19 | cic99 | [r1] |
| test_dtree.py | 2009-11-19 | cic99 | [r1] |
| test_file.py | 2009-11-19 | cic99 | [r1] |
| test_fromfile0.txt | 2010-10-04 | igcf | [r66] |
| test_fromfile1.txt | 2010-10-04 | igcf | [r66] |
| test_hmm.py | 2009-11-19 | cic99 | [r1] |
| test_iq.py | 2009-11-19 | cic99 | [r1] |
| test_mixture.py | 2009-11-19 | cic99 | [r1] |
| test_struct.py | 2009-11-19 | cic99 | [r1] |
| test_tilt.py | 2009-11-19 | cic99 | [r1] |
| test_traceback.py | 2009-11-19 | cic99 | [r1] |
| unittestlineargaussian.py | 2009-12-15 | igcf | [r2] |
Read Me
PyMix - Python Mixture Package
Author: Benjamin Georgi
Contact: georgi@molgen.mpg.de
Installation Instructions:
Required Packages
# Python (version 2.5.2 recommended)
# Numpy
# GSL GNU Scientific library
Optional Packages
# GHMM for mixtures of HMMs
# pylab for plotting functions in plotMixture.py
How to install ?
Extract the tarball to some directory of your choice.
Change into the directory and run:
python setup.py build
python setup.py install --prefix=/some/where
After the installation is completed I would recommend to run
mixtureunittests.py to check whether everything is in order.
Documentation
Example code for most aspects of the library can be found in
the /examples subdirectory and mixtureunittest.py.
Automatically generated documentation for the module is available
on the Pymix home page www.pymix.org.
