Re: [pydstool-users] Installation Issues

[Gianna M. <gia...@un...>]

Hi,

I installed the conda package "libpython" which Continuum Analytics 
built to resolve linking problems and now everything seems to work.

Cheers,
Gianna






Am 23.09.2015 um 15:33 schrieb Gianna Marschmann:
> Hello,
>
> I am new to python and on Windows 8.1 64-bit and am trying to install 
> PyDSTool with Anaconda, specifically following those steps:
>
> - Installed Anaconda 2.3.0, 32-bit version with Python 2.7
>
> - Installed SWIG 3.0.7 and added to system PATH 
> C:\Users\Gianna\swigwin-3.0.7 and PYTHON_INCLUDE C:\Anaconda\include 
> and PYTHON_LIB C:\Anaconda\libs\python27.lib, C:\Users\Gianna>swig 
> returns 'Must specify input file.'
>
> - Installed MinGW gcc and added \bin directory to PATH . 
> C:\Users\Gianna>gcc --version returns '4.8.1'
>
> - Created the file C:\Anaconda\Lib\distutils\distutils.cfg with
>
> [build]
>  compiler=mingw32
>
> - Extracted PyDSTool to C:\Users\Gianna\robclewley-pydstool-9ecaefa/ 
> and ran python setup.py install
>
> - Created the file C:\Anaconda\Lib\site-packages\PyDSTool.pth with
>
>  C:\\
> C:\\Users\\
> C:\\Tools\\Gianna\\
> C:\\Tools\\Gianna\\robclewley-pydstool-9ecaefa\\
>
> - Running \examples>python run_all_tests.py gives the following
>
>
> Test scripts that failed:
>         PyCont_Hopfield.py
>         PyCont_SaddleNode.py
>         imprecise_event_test.py
>         interp_dopri_test.py
>         HH_model_Cintegrator.py
>         HH_loaded_Cintegrator.py
>         CIN.py
>         HH_model_Cintegrator_testbounds.py
>         Dopri_backwards_test.py
>         test_hybrid_extinputs_Cintegrator.py
>         SLIP_2D_pdc.py
>         DAE_example.py
>         freefinger_noforce_radau.py
>         sloppycell_example.py
>         pest_test3_Cintegrator.py
>         pest_test4_Cintegrator.py
>         PyCont_MorrisLecar_TypeI.py
>         PyCont_MorrisLecar_TypeII.py
>         PyCont_LPNeuron.py
>         PyCont_HindmarshRose.py
>         PyCont_ABReaction.py
>         PyCont_Hamiltonian.py
>         PyCont_Lorenz.py
>         PyCont_vanDerPol.py
>
> Summary:
> Basic PyDSTool functions: appears to work on your system
> Map related modules: appears to work on your system
> VODE related modules: appears to work on your system
> Symbolic differentiation module: appears to work on your system
> Parameter estimation module: appears to work on your system
> PyCont: appears to be broken on your system
> Dopri ODE systems: appears to be broken on your system
> Radau ODE systems: appears to be broken on your system
> Parameter estimation module with external compilers: appears to be 
> broken on you
> r system
> PyCont interface to AUTO: appears to be broken on your system
>
>
> I now don't understand the error messages on the tests that failed 
> (see appendix).  There always seem to be "undefined references" to radau.
>
> Can you help me with further steps?
>
> Thank you,
> Gianna
>
>
>
>
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