Dear colleague,
dear member of the Proteomics community,
please forward this message to potentially interested colleagues!
The HUPO Proteomics Standards Initiative (PSI) develops standards
for documentation and storage of Proteomics data (see
http://www.psidev.info for an overview of activities).
A recommendation document specifying the proBAM file format
has been submitted to the PSI document process.
The submission can be found here:
http://www.psidev.info/proBAM-in-docproc
After having passed a 30-day review of the PSI steering group
with minor changes, the proposed document version 1.0.0 DRAFT
now goes through 60-days public comments and external
review phase (end: 31st May 2017).
The format represents output from proteogenomic studies,
mapping the MS-based proteomics PSM information to
the genome. Background: The proBAM format builds upon the structure of the
original SAM/BAM format (http://samtools.github.io/hts-specs/SAMv1.pdf)
by extending it with other mandatory fields to accommodate unique features
on MS-based proteomics peptide-spectrum matches (PSMs) information.
PLEASE ADD COMMENTS to the submission page
(http://www.psidev.info/proBAM-in-docproc)
or send them directly to martin.eisenacher: at : rub.de for
example regarding the following criteria:
- That it is well formed that is, it is presented in accordance with the
templates and is clearly written.
- That it is sufficiently detailed and clearly contains and comprehensively
describes the necessary and sufficient explanation of the format.
- That the examples are in accordance with the specification.> >
This message is to encourage you to contribute to the standards
development activity by commenting on the material that is
available online. We invite both positive and negative comments.
If negative comments are being made, these could be on the relevance,
clarity, correctness, appropriateness, etc, of the proposal as
a whole or of specific parts of the proposal.
If you do not feel well placed to comment on this document, but
know someone who may be, please consider forwarding this request.
There is no requirement that people commenting should have had any
prior contact with the PSI.
Many thanks for your valuable time and participation
Martin Eisenacher (PSI Editor)
--
PD DR. MARTIN EISENACHER
Department Leader
DEPARTMENT Medical Bioinformatics
Medizinisches Proteom-Center
Ruhr-University Bochum
Building ZKF E.141 | Universitätsstraße 150 | D-44801 Bochum
Fon +49 (0)234 32-29288 | Fax +49 (0)234 32-14554
E-mail <mailto:mar...@ru...> mar...@ru...
<http://www.medizinisches-proteom-center.de/>
www.medizinisches-proteom-center.de
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