ERROR: cvParam local FDR should have units, but it does not!
ERROR: cvParam q-value for peptides should have units, but it does not!
(the previous two may be errors in the CV itself?)
WARNING: MS:1001062 should be 'Mascot MGF format' instead of 'Mascot MGF file'
WARNING: MS:1001189 should be 'modification specificity peptide N-term' instead of 'modification specificity N-term'
WARNING: MS:1001330 should be 'X!Tandem:expect' instead of 'X\!Tandem:expect'
WARNING: MS:1001331 should be 'X!Tandem:hyperscore' instead of 'X\!Tandem:hyperscore'
WARNING: MS:1001401 should be 'X!Tandem xml format' instead of 'X\!Tandem xml file'
WARNING: MS:1001476 should be 'X!Tandem' instead of 'X\!Tandem'
WARNING: MS:1001868 should be 'distinct peptide-level q-value' instead of 'q-value for peptides'
WARNING: MS:1002244 should be 'mzidLib:FalseDiscoveryRate' instead of 'mzidLib:FalseDiscoveryRat'
WARNING: MS:1002404 should be 'count of identified proteins' instead of 'count of identified protein'
I'm not quite sure what to make of the X\!Tandem business. That is the the way it is written in the OBO file, but I assume that is an escape character that is not to be included in the XML? Or? Should that even be in the OBO file? Is that a limitation of the OBO format? I assume so, because the OBO format uses an ! as a separater character in some places. This should not be repeated in the XML?
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