psidev-pi-dev

[Psidev-pi-dev] [HUPO-PSI/mzIdentML] Validator: too strict on "cross-link spectrum identification item" values (#31)

[Eugen N. <not...@gi...>]

The CV accession="MS:1002511" name="cross-link spectrum identification item" must have the same value for SIIs that represent a pair of cross-linked peptides.
Currently the validator only allows exactly two equal values, but we have 4 SIIs for the same cross-link when using isotope labelled linkers.

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Validator: too strict on "cross-link spectrum identification item" values (#31)

[andrewrobertjones <not...@gi...>]

Discussed the correct behaviour should be to check 2 or 4 having the same value --> 4 for the case of stable isotopes only

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Validator: too strict on "cross-link spectrum identification item" values (#31)

[Mathias W. <not...@gi...>]

@germa can you please add this to the validator?

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Validator: too strict on "cross-link spectrum identification item" values (#31)

[Gerhard M. <not...@gi...>]

@matthias The allowed value 4 is already added; in case it does not work, please send me an example file

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Validator: too strict on "cross-link spectrum identification item" values (#31)

[Mathias W. <not...@gi...>]

@germa thx Gerhard! 

(btw, @matt... not my handle :smile: )

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Validator: too strict on "cross-link spectrum identification item" values (#31)

[Mathias W. <not...@gi...>]

Closed #31.

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