psidev-pi-dev

[Psidev-pi-dev] [HUPO-PSI/mzIdentML] Cross-linking - protein interaction evidence (#24)

[andrewrobertjones <not...@gi...>]

I have closed down long convoluted thread on various CV items: #2. 

The have made a proposal for how I think we should represent protein interaction evidence in mzid - see attached pdf.
[xl_protein_interaction.pdf](https://github.com/HUPO-PSI/mzIdentML/files/248648/xl_protein_interaction.pdf)



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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Cross-linking - protein interaction evidence (#24)

[andrewrobertjones <not...@gi...>]

Overall agreement on call that this looks okay for now. Lutz will make proposal for CV terms for his software.

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Cross-linking - protein interaction evidence (#24)

[andrewrobertjones <not...@gi...>]

@germa - Can you update the validator to check the regex structure for Lutz examples.



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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Cross-linking - protein interaction evidence (#24)

[Gerhard M. <not...@gi...>]

Shouldn't it be accession = Prot C.1 inside PDH 1.1 of PAG 3 (in the left figure) ?

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Cross-linking - protein interaction evidence (#24)

[andrewrobertjones <not...@gi...>]

@lutzfischer can you re-check the validator to see if everything is now okay

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