psidev-pi-dev

Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Mod re-scoring (#3)

[Harald B. <not...@gi...>]

@andrewrobertjones I decided to add the them as separate issues instead as I think this is clearer and easier to maintain. So please add more if there is something I forgot.

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Mod re-scoring (#3)

[Harald B. <not...@gi...>]

@andrewrobertjones @germa 
Quick update on the validation of the PeptideShaker mzid 1.2 example file. After Gerhard's recent fixes the file now validates without any errors and with a lot less INFO messages. The remaining messages mainly relate to additional CV terms that could be added but that are not mandatory. 

There are only three remaining questions, all set up as separate issues: 
- Allow search statistics children terms: https://github.com/HUPO-PSI/mzIdentML/issues/8
- Use of the DenovoSearchType_may_rule: https://github.com/HUPO-PSI/mzIdentML/issues/17
- How to annotate immonium ions: https://github.com/HUPO-PSI/mzIdentML/issues/9

And on a related note to the last point, what about reporter ions? See: https://github.com/HUPO-PSI/mzIdentML/issues/16.

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Mod re-scoring (#3)

[andrewrobertjones <not...@gi...>]

All ported to new issues - closing

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Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Mod re-scoring (#3)

[andrewrobertjones <not...@gi...>]

Closed #3.

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