The following terms ought to be anticipated when running the validator (and thus remove the warning messages):
- MS:1002567 (phosphoRS score threshold) and MS:1002557 (D-Score threshold) ought to be anticipated terms under Threshold under SpectrumIdentificationProtocol?
- MS:1002497 (group PSMs by sequence with modifications) (and the other new related terms) ought to be anticipated terms under AdditionalSearchParams?
- MS:1000894 (retention time) ought to be anticipated terms under SpectrumIdentificationResult?
- MS:1002471, MS:1002470 and MS:1002542 ought to be anticipated terms under ProteinAmbiguityGroup?
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