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From: David C. <dc...@ma...> - 2008-09-24 15:10:35
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Hi everyone, There will be an AnalysisXML working group conference call on Thursday at: http://www.timeanddate.com/worldclock/fixedtime.html?day=25&month=9&year=2008&hour=16&min=0&sec=0&p1=136 Minutes from last meeting at: http://psidev.info/index.php?q=node/369 Agenda: 1. Changes to the use cases The list of use cases was rather out of date. Update at: http://psidev.info/index.php?q=node/371 Please either add a comment at the bottom of that page or send a message to the list or be prepared to discuss this at the teleconference tomorrow. 2. Is issue 26 closed? http://code.google.com/p/psi-pi/issues/detail?id=18 3. Review of SpectraST_example.xml There is an example instance document for a spectraST in the SVN. http://code.google.com/p/psi-pi/source/browse/trunk/examples/SpectraST_example.xml See also the issue in the issue list: http://code.google.com/p/psi-pi/issues/detail?id=18#c2 4. Other items still to be actioned from last weeks minutes. 5. Other items on the issues list: http://code.google.com/p/psi-pi/issues/list Dial in details: + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 + Generic international: +44 2083222500 (UK number) access code: 297427 -- David Creasy Matrix Science 64 Baker Street London W1U 7GB, UK Tel: +44 (0)20 7486 1050 Fax: +44 (0)20 7224 1344 dc...@ma... http://www.matrixscience.com Matrix Science Ltd. is registered in England and Wales Company number 3533898 |
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From: Jones, A. <And...@li...> - 2008-09-26 09:44:15
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Some changes to the schema uploaded by SVN. As discussed on the call, it seems to make sense to have the summary collections at the top of the file e.g. cvList, AnalysisSoftware etc. |
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From: Jones, A. <And...@li...> - 2008-09-26 11:13:33
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A few more minor changes I want to make to the schema: - Remove the rest of the underscores that precede some of the element names in FuGElight (e.g. "_role" --> "role") - Make AnalysisProtocol and AnalysisProtocolApplication abstract - I think they are supposed to be anyway? - ProteinDetection has an element called _runtimeParams, I would prefer this to be just "params" (since this is effectively a protocol not a protocol application so these are not strictly runtime parameters) - AnalysisProtocolCollection allows any subclasses of Protocol to be included so this allows a FuGE GenericProtocol to be reported. I think we should restrict the protocol collection to only reporting subclasses of AnalysisProtocol i.e. SpectrumIdentificationProtocol and ProteinDetectionProtocol I also plan to strip more out of FuGE light so it only contains classes that we are using now or are likely to want to use in axml v2. I would like to upload these changes today if possible while I have time to do it, so let me know if anyone seems an obvious problem with any of these changes? We can always role them back if I've missed something Cheers Andy > -----Original Message----- > From: Jones, Andy [mailto:And...@li...] > Sent: 26 September 2008 10:44 > To: psi...@li... > Subject: [Psidev-pi-dev] New schema committed > > Some changes to the schema uploaded by SVN. As discussed on the call, it seems > to make sense to have the summary collections at the top of the file e.g. cvList, > AnalysisSoftware etc. > > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Psidev-pi-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev |
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From: Jones, A. <And...@li...> - 2008-09-26 14:12:52
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Another schema committed by SVN, added several additional KeyRef that were missing. Each instance of cvParam should have a KeyRef for cvList (cvRef) but it would require putting in the XPath of each one individually (I don't think XSD:KeyRef supports an XPath to select of node of a particular name anywhere in the document). I can't be bothered adding all these KeyRefs at this stage but we should probably try to do this before submission... Cheers, Andy > -----Original Message----- > From: Jones, Andy [mailto:And...@li...] > Sent: 26 September 2008 10:44 > To: psi...@li... > Subject: [Psidev-pi-dev] New schema committed > > Some changes to the schema uploaded by SVN. As discussed on the call, it seems > to make sense to have the summary collections at the top of the file e.g. cvList, > AnalysisSoftware etc. > > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Psidev-pi-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev |
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From: David C. <dc...@ma...> - 2008-09-28 18:02:47
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All looks good to me. I've updated the three Mascot examples in the examples directory so these now validate again. David Jones, Andy wrote: > Another schema committed by SVN, added several additional KeyRef that were missing. > > Each instance of cvParam should have a KeyRef for cvList (cvRef) but it would require putting in the XPath of each one individually (I don't think XSD:KeyRef supports an XPath to select of node of a particular name anywhere in the document). I can't be bothered adding all these KeyRefs at this stage but we should probably try to do this before submission... > > Cheers, Andy > > >> -----Original Message----- >> From: Jones, Andy [mailto:And...@li...] >> Sent: 26 September 2008 10:44 >> To: psi...@li... >> Subject: [Psidev-pi-dev] New schema committed >> >> Some changes to the schema uploaded by SVN. As discussed on the call, it seems >> to make sense to have the summary collections at the top of the file e.g. cvList, >> AnalysisSoftware etc. >> >> >> >> ------------------------------------------------------------------------- >> This SF.Net email is sponsored by the Moblin Your Move Developer's challenge >> Build the coolest Linux based applications with Moblin SDK & win great prizes >> Grand prize is a trip for two to an Open Source event anywhere in the world >> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> _______________________________________________ >> Psidev-pi-dev mailing list >> Psi...@li... >> https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Psidev-pi-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev -- David Creasy Matrix Science 64 Baker Street London W1U 7GB, UK Tel: +44 (0)20 7486 1050 Fax: +44 (0)20 7224 1344 dc...@ma... http://www.matrixscience.com Matrix Science Ltd. is registered in England and Wales Company number 3533898 |
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From: Martin E. <mar...@ru...> - 2008-10-09 14:56:29
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> Each instance of cvParam should have a KeyRef for cvList (cvRef) but it would require putting in the > XPath of each one individually (I don't think XSD:KeyRef supports an XPath to select of node of a > particular name anywhere in the document). I can't be bothered adding all these KeyRefs at this stage > but we should probably try to do this before submission... More important seems, that the cv elements of the cvList have no "id" attribute, so all cvRef attributes point to nothing. Regarding KeyRefs I tried some syntax with * in the XPaths, but that didn't work indeed... Bye Martin > > -----Original Message----- > > From: Jones, Andy [mailto:And...@li...] > > Sent: 26 September 2008 10:44 > > To: psi...@li... > > Subject: [Psidev-pi-dev] New schema committed > > > > Some changes to the schema uploaded by SVN. As discussed on the call, it seems > > to make sense to have the summary collections at the top of the file e.g. cvList, > > AnalysisSoftware etc. > > > > > > > > ------------------------------------------------------------------------- > > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > > Build the coolest Linux based applications with Moblin SDK & win great prizes > > Grand prize is a trip for two to an Open Source event anywhere in the world > > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > > _______________________________________________ > > Psidev-pi-dev mailing list > > Psi...@li... > > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Psidev-pi-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev |
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From: David C. <dc...@ma...> - 2008-09-29 09:56:26
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Hi everyone, Minutes for the meeting (thanks Jenny) now at: http://psidev.info/index.php?q=node/372 Next meeting this Thursday: http://www.timeanddate.com/worldclock/fixedtime.html?month=10&day=2&year=2008&hour=16&min=0&sec=0&p1=136 I'll post an agenda on Wednesday. David David Creasy wrote: > Hi everyone, > > There will be an AnalysisXML working group conference call on Thursday at: > http://www.timeanddate.com/worldclock/fixedtime.html?day=25&month=9&year=2008&hour=16&min=0&sec=0&p1=136 > > Minutes from last meeting at: > http://psidev.info/index.php?q=node/369 > > > Agenda: > 1. Changes to the use cases > The list of use cases was rather out of date. Update at: > http://psidev.info/index.php?q=node/371 > Please either add a comment at the bottom of that page or send a > message to the list or be prepared to discuss this at the > teleconference tomorrow. > > 2. Is issue 26 closed? > http://code.google.com/p/psi-pi/issues/detail?id=18 > > 3. Review of SpectraST_example.xml > There is an example instance document for a spectraST in the SVN. > http://code.google.com/p/psi-pi/source/browse/trunk/examples/SpectraST_example.xml > See also the issue in the issue list: > http://code.google.com/p/psi-pi/issues/detail?id=18#c2 > > 4. Other items still to be actioned from last weeks minutes. > > 5. Other items on the issues list: > http://code.google.com/p/psi-pi/issues/list > > Dial in details: > > + Germany: 08001012079 > + Switzerland: 0800000860 > + UK: 08081095644 > + USA: 1-866-314-3683 > + Generic international: +44 2083222500 (UK number) > > access code: 297427 > -- David Creasy Matrix Science 64 Baker Street London W1U 7GB, UK Tel: +44 (0)20 7486 1050 Fax: +44 (0)20 7224 1344 dc...@ma... http://www.matrixscience.com Matrix Science Ltd. is registered in England and Wales Company number 3533898 |
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