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From: Jones, A. <And...@li...> - 2016-06-29 15:04:38
|
Please start without me, I will be there in 5 mins ________________________________ From: Jones, Andy [And...@li...] Sent: 29 June 2016 09:14 To: 'psi...@li...' Subject: Re: [Psidev-pi-dev] Call today Hi all, Sorry for the late notice, let’s have a call at 4pm UK time: http://www.timeanddate.com/worldclock/fixedtime.html?iso=20160629T16&p1=301 today to catch up on progress and open issues. Gerhard, have you managed to update the spec doc – I haven’t checked lately? Can everyone re-run validation on files to see if everything looks okay and report any issues. Thanks Andy Numbers: + UK: 0808 109 5644 + US: 877-420-0272 + Belgium: 0800 509 80 + Germany: 0800 101 2079 + Switzerland: 0800 000 860 + Generic international: +44 (0) 20 8322 2500 (UK number) Access code: 297427 # From: Jones, Andy [mailto:And...@li...] Sent: 16 June 2016 09:47 To: 'psi...@li...' Subject: [Psidev-pi-dev] Call today Hi all, We have a scheduled call at 4pm UK time today. I will unfortunately have to leave at 4.20 but let’s have a brief catch up as to where we are and rattle through some of the open issues. Best wishes Andy Numbers: + UK: 0808 109 5644 + US: 877-420-0272 + Belgium: 0800 509 80 + Germany: 0800 101 2079 + Switzerland: 0800 000 860 + Generic international: +44 (0) 20 8322 2500 (UK number) Access code: 297427 # |
From: Jones, A. <And...@li...> - 2016-06-29 08:14:44
|
Hi all, Sorry for the late notice, let’s have a call at 4pm UK time: http://www.timeanddate.com/worldclock/fixedtime.html?iso=20160629T16&p1=301 today to catch up on progress and open issues. Gerhard, have you managed to update the spec doc – I haven’t checked lately? Can everyone re-run validation on files to see if everything looks okay and report any issues. Thanks Andy Numbers: + UK: 0808 109 5644 + US: 877-420-0272 + Belgium: 0800 509 80 + Germany: 0800 101 2079 + Switzerland: 0800 000 860 + Generic international: +44 (0) 20 8322 2500 (UK number) Access code: 297427 # From: Jones, Andy [mailto:And...@li...] Sent: 16 June 2016 09:47 To: 'psi...@li...' Subject: [Psidev-pi-dev] Call today Hi all, We have a scheduled call at 4pm UK time today. I will unfortunately have to leave at 4.20 but let’s have a brief catch up as to where we are and rattle through some of the open issues. Best wishes Andy Numbers: + UK: 0808 109 5644 + US: 877-420-0272 + Belgium: 0800 509 80 + Germany: 0800 101 2079 + Switzerland: 0800 000 860 + Generic international: +44 (0) 20 8322 2500 (UK number) Access code: 297427 # |
From: <Afr...@bi...> - 2016-06-24 06:21:44
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <title>[SUBJECT]</title> <style type="text/css"> body { padding-top: 0 !important; padding-bottom: 0 !important; padding-top: 0 !important; padding-bottom: 0 !important; margin: 0 auto !important; width: 90% !important; -webkit-text-size-adjust: 100% !important; -ms-text-size-adjust: 100% !important; -webkit-font-smoothing: antialiased !important; font-family: Arial !important; } a { text-decoration: none; text-decoration-color: transparent; } img { height: auto; } .content { width: 100%; } .header { padding: 10x; } .header.Logo { padding: 20px 0 20px 20px; } .innerpadding { padding: 30px 30px 30px 30px; } .borderbottom { border-bottom: 1px solid #f2eeed; } .subhead { font-size: 17px; color: #ffffff !important; } /*.h1, .h2, .bodycopy { color: #153643; font-family: sans-serif; } .h2 { padding: 0 0 15px 0; font-size: 24px; line-height: 28px; font-weight: bold; }*/ h2 { margin: 20px 0; padding: 0; } .bodycopy { font-size: 16px; line-height: 22px; } .button { text-align: center; font-size: 18px; font-family: sans-serif; font-weight: bold; padding: 0 30px 0 30px; } .button a { color: #ffffff; text-decoration: none; } .footer { padding: 30px 15px; } .footercopy { font-family: sans-serif; font-size: 14px; color: #ffffff; } .footercopy a { color: #ffffff; text-decoration: underline; } .mainTitle { color: #efefef; font-size: 1em !important; margin-bottom: 5px; margin-top: 30px; } small { color: #e5e5e5; display: inline-block; /*font-size: 16px;*/ margin-bottom: 10px; margin-top: 6px; } @media only screen and (min-width: 551px), screen and (min-device-width: 551px) { .mainTitle { font-size: 25px !important; } small { /*font-size:16px!important;*/ } } @media only screen and (max-width: 550px), screen and (max-device-width: 550px) { body[yahoo] .hide { display: none !important; } body[yahoo] .buttonwrapper { background-color: transparent !important; } body[yahoo] .button { padding: 0px !important; } body[yahoo] .button a { background-color: #e05443; padding: 15px 15px 13px !important; } body[yahoo] .unsubscribe { display: block; margin-top: 20px; padding: 10px 50px; background: #2f3942; border-radius: 5px; text-decoration: none !important; font-weight: bold; } body { width: 100% !important; } .header { padding: px 0; } .header.Logo { padding: 10px 7px 10px 5px; } .mainTitle { /*font-size: 20px !important;*/ line-height: normal !important; color: #efefef !important; margin-bottom: 5px; margin-top: 30px; } small { /*font-size: 12px;*/ margin-right: 15px; } .innerpadding { padding: 20px 10px; } .subhead { display: none; } } </style> </head> <body yahoo=yahoo bgcolor="#F6F6F6"> <table width="100%" border="0"> <tr> <td> <table width="100%" bgcolor="#F6F6F6" border="0" cellpadding="0" cellspacing="0"> <tr> <td> <table bgcolor="#ffffff" class="content" border="0" align="center" cellspacing="0" width="100%" cellpadding="0"> <tr bgcolor='#ffffff'> <td bgcolor='#ffffff' class="header Logo" width="85" style="padding: 8px; border:0 solid #ffffff"> <!-- =================== Change Logo ============================ --> <img border="0" class="img-responsive fix" src="http://afn.bibalex.org/images/Health-Logo.png" /> <!-- ====================== END =============================== --> <!--<img class="fix" src="http://afn.bibalex.org/images/Icon-W1.png" alt=' BA African Network for Environment ' width="85" border="0" />--> </td> <!--<td bgcolor='#ffffff' class="header" style="border:0 solid #ffffff"> <table width="100%" border="0" cellspacing="0" cellpadding="10px"> <tr> <td class="h1 mainTitle" style="padding: 7px; border:0 solid #ffffff"> <h2 style="color:#efefef;font-size:1.5em"> BA African Network for Environment <br /> <small class="subhead" style="color:#efefef; font-weight: normal;"> Connecting the mind of Africa to the world </small> </h2> </td> </tr> </table> </td>--> </tr> <tr> <!-- =================== Change Header Border color ============================ --> <td height="25" bgcolor="#C90101"></td> <!-- ============================== END ======================================= --> </tr> </table> </td> </tr> <tr> <td class="innerpadding borderbottom" colspan="2"> <table width="100%" border="0" cellspacing="0" cellpadding="0"> <td class="bodycopy"><p style="text-align: center;">"By seizing this moment, we can end the AIDS epidemic as a public health threat by 2030." UNAIDS.</p> <p style="text-align: center;">To read more about the complete strategy of UNAIDS for 2016 to 2021, kindly click <a href="http://afn.bibalex.org/GlobalHealth/ResearchAndReports/ResearchAndReport.aspx?id=243"> here </a> .</p> <p align="center"><img alt="" src="http://afn.bibalex.org/GlobalHealth/Newsletter/Attachments/images/aids.jpg" style="width: 600px; height: 440px;" /></p> <p style="text-align: center;">Discover our recently added content of various thought-provoking and intriguing reports by visiting the <a href="http://afn.bibalex.org/GlobalHealth"> BA African Network for Global Health website </a>.</p> </td> </table> </td> </tr> </table> </td> </tr> <tr bgcolor="#32383e"> <td class="footer" colspan="2"> <table width="100%" border="0" cellspacing="0" cellpadding="0"> <tr> <td align="center"> <div class="contentEditableContainer contentTextEditable"> <div class="contentEditable" style='color:#A8B0B6; font-weight:bold;font-size:13px;line-height: 30px;'> <img src="http://afn.bibalex.org/images/BA-logo-W.png" align="absmiddle" style="width:90px;margin-bottom: 15px; display: block;" /> </div> </div> <div class="contentEditableContainer contentTextEditable"> <div class="contentEditable" style='color:#A8B0B6; font-size:13px;line-height: 15px;'> <span style="line-height: 20px; color: #A8B0B6; font-size: 13px;">P.O. 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From: Eric D. <ede...@sy...> - 2016-06-21 18:52:58
|
Hi Gerhard, certainly. I have generated a set of new HTML documentations with the autogenerator. Note that many of the example files still have incorrect CV terms. I have just now updated the GitHub issues list with problems that I see today. Some of these errors may have made their way into the autogenerated documentation, so it would be desirable to fix these issues and rerun the generator before the documentation is properly used, but that’s up to you. Here are the files: http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0.html http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0_all.html http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0_PeptideShaker.html http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0_combined.html http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0_xiFDR.html The first one is the same as the one with the “all” tag, where “all” really means these: INFO: Reading examples file 'combined_fdr_1.2.mzid' INFO: Reading examples file 'mzidLib_peaklist2a_plus_ecoli_versus_unimod_full_xtandem_fdr_threshold_groups.mzid' INFO: Reading examples file 'mzidLib_Rosetta2a_Ecoli_spectra_msgfplus_fdr_threshold_groups.mzid' INFO: Reading examples file 'mzidLib_rosetta_2a_uniprot_proteogrouped.mzid' INFO: Reading examples file 'OpenxQuest_example_added_annotations.mzid' INFO: Reading examples file 'OpenxQuest_example.mzid' INFO: Reading examples file 'PAnalyzer_rosetta_2a_ecoli_uniprot.mzid' INFO: Reading examples file 'PAnalyzer_rosetta_2a_uniprot.mzid' INFO: Reading examples file 'PAnalyzer_rosetta_2b_ecoli_uniprot.mzid' INFO: Reading examples file 'PAnalyzer_rosetta_2b_uniprot.mzid' INFO: Reading examples file 'PeptideShaker_mzid_1_2_example.mzid' INFO: Reading examples file 'xiFDR-CrossLinkExample.mzid' And then there’s also a version of “all” that is better formatted for pasting into a Word doc (I know it used to work when copying and pasting from a Firefox window, but vaguely recall that maybe it didn’t work in another browser type?) http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0_paste.html Regards, Eric *From:* mayerg97 [mailto:ger...@ru...] *Sent:* Tuesday, June 21, 2016 7:41 AM *To:* psi...@li... *Subject:* Re: [Psidev-pi-dev] mzid 1.2 updates Hi Eric, can you please rerun the script for generating the spec docs using the latest examples? Wasn't there before also a link generated for content, which can be directly pasted into Word? Thanks, and best regards, Gerhard Am 12.04.2016 um 22:54 schrieb Eric Deutsch: Hi everyone, I have pulled the latest from github and refreshed the on-line spec docs: http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0.html Note that the embedded images may not be updated from long ago, I have not checked to see if they need to be updated. This was generated using the PeptideShaker file as the only example, because it seems that other examples still have CV errors in them. The PeptideShaker files seems to be all up to date, except for the one CV value issue under discussion in another thread. One anomaly in the docs, under AnalysisParams: http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0.html#AnalysisParams the mapping file seems to say that a child of MS:1001194 is permitted. Should that perhaps be a child of MS:1001060 instead? Some CV errors and warnings from my validator on two other files I checked: combined_fdr_1.2.mzid +++++ ERROR: cvParam distinct peptide-level q-value should have units, but it does not! WARNING: MS:1001062 should be 'Mascot MGF format' instead of 'Mascot MGF file' WARNING: MS:1001400 should be 'OMSSA xml format' instead of 'OMSSA xml file' WARNING: MS:1002439 should be 'final PSM list' instead of 'final PSM list UNDER DISCUSSION' ERROR: cv PSI-MS still points to SourceForge ERROR: cv UO still points to SourceForge xiFDR-CrossLinkExample.mzid +++++ ERROR: cvParam contact address should have a value, but it does not! ERROR: cvParam contact name should have a value, but it does not! ERROR: cvParam product ion intensity should have a value, but it does not! ERROR: cvParam unknown modification should have a value, but it does not! WARNING: cvParam product ion intensity has a legal unit MS:1000131 but its name 'MS:1000131' should be 'number of detector counts'! WARNING: MS:1001062 should be 'Mascot MGF format' instead of 'Mascot MGF file' WARNING: MS:1001401 should be 'X!Tandem xml format' instead of 'X\!Tandem xml file' WARNING: MS:1002511 should be 'cross-link spectrum identification item' instead of 'Cross-linked spectrum identification item.' WARNING: MS:1002543 should be 'xiFDR' instead of 'XiFDR' ERROR: cv PSI-MS still points to SourceForge ERROR: cv UO still points to SourceForge *From:* Jones, Andy [mailto:And...@li...] *Sent:* Tuesday, April 05, 2016 4:21 AM *To:* psi...@li... *Subject:* Re: [Psidev-pi-dev] mzid 1.2 updates Thanks Yasset, I’m in now, and pushed my updates. Best wishes Andy *From:* Yasset Perez-Riverol [mailto:yp...@eb... <yp...@eb...>] *Sent:* 05 April 2016 10:44 *To:* Jones, Andy <jo...@li...>; psi...@li... *Subject:* Re: [Psidev-pi-dev] mzid 1.2 updates Invitation sent On 05/04/2016 10:38, Jones, Andy wrote: In fact, I didn’t manage to push this yet to the repository, looks like I don’t have access. I will hopefully upload this later on today, if/when someone can give me access! Thanks Andy *From:* Jones, Andy [mailto:And...@li... <And...@li...>] *Sent:* 05 April 2016 10:10 *To:* psi...@li... *Subject:* [Psidev-pi-dev] mzid 1.2 updates Hi all, I have linked up to GitHub now (at last), so I will start using that location for all updates. If you would like to update your example files, the schema, spec doc or anything else – please do so via GIT ( https://github.com/HUPO-PSI/mzIdentML). I have just updated the spec doc and XSD with minor changes that are being discussed on the list. If you need access, send a mail to the list, and someone will do this for you. I’m quite new to GitHub, so perhaps someone else can help with this! Also, anyone know how to get GitHub to send the commit messages to this list? Cheers Andy ------------------------------------------------------------------------------ _______________________________________________ Psidev-pi-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev -- Yasset Perez-Riverol PhD. Bioinformatician Proteomics Services Team, PRIDE Group European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom Twitter: @ypriverol ------------------------------------------------------------------------------ Find and fix application performance issues faster with Applications Manager Applications Manager provides deep performance insights into multiple tiers of your business applications. It resolves application problems quickly and reduces your MTTR. Get your free trial! https://ad.doubleclick.net/ddm/clk/302982198;130105516;z _______________________________________________ Psidev-pi-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev -- *--* *Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER* *PhD student* *Medizinisches Proteom-Center* *DEPARTMENT Medical Bioinformatics* *Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum *Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554 *E-mail *ger...@ru... www.medizinisches-proteom-center.de [image: RUB Logo] ANNOUNCEMENT de.NBI summer school September 2016: *Analysis of Mass-Spectrometric Data - * *Big Data Bioinformatics in Proteomics and Metabolomics* http://www.denbi.de/index.php/11-training-cat/95-lss2016 |
From: mayerg97 <ger...@ru...> - 2016-06-21 14:41:32
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Hi Eric, can you please rerun the script for generating the spec docs using the latest examples? Wasn't there before also a link generated for content, which can be directly pasted into Word? Thanks, and best regards, Gerhard Am 12.04.2016 um 22:54 schrieb Eric Deutsch: > > Hi everyone, I have pulled the latest from github and refreshed the > on-line spec docs: > > http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0.html > > Note that the embedded images may not be updated from long ago, I have > not checked to see if they need to be updated. > > This was generated using the PeptideShaker file as the only example, > because it seems that other examples still have CV errors in them. The > PeptideShaker files seems to be all up to date, except for the one CV > value issue under discussion in another thread. > > One anomaly in the docs, under AnalysisParams: > > http://www.peptideatlas.org/PSI/schemas/mzIdentML/1.2/mzIdentML1.2.0.html#AnalysisParams > > the mapping file seems to say that a child of MS:1001194 is permitted. > Should that perhaps be a child of MS:1001060 instead? > > Some CV errors and warnings from my validator on two other files I > checked: > > combined_fdr_1.2.mzid > > +++++ > > ERROR: cvParam distinct peptide-level q-value should have units, but > it does not! > > WARNING: MS:1001062 should be 'Mascot MGF format' instead of 'Mascot > MGF file' > > WARNING: MS:1001400 should be 'OMSSA xml format' instead of 'OMSSA xml > file' > > WARNING: MS:1002439 should be 'final PSM list' instead of 'final PSM > list UNDER DISCUSSION' > > ERROR: cv PSI-MS still points to SourceForge > > ERROR: cv UO still points to SourceForge > > xiFDR-CrossLinkExample.mzid > > +++++ > > ERROR: cvParam contact address should have a value, but it does not! > > ERROR: cvParam contact name should have a value, but it does not! > > ERROR: cvParam product ion intensity should have a value, but it does not! > > ERROR: cvParam unknown modification should have a value, but it does not! > > WARNING: cvParam product ion intensity has a legal unit MS:1000131 but > its name 'MS:1000131' should be 'number of detector counts'! > > WARNING: MS:1001062 should be 'Mascot MGF format' instead of 'Mascot > MGF file' > > WARNING: MS:1001401 should be 'X!Tandem xml format' instead of > 'X\!Tandem xml file' > > WARNING: MS:1002511 should be 'cross-link spectrum identification > item' instead of 'Cross-linked spectrum identification item.' > > WARNING: MS:1002543 should be 'xiFDR' instead of 'XiFDR' > > ERROR: cv PSI-MS still points to SourceForge > > ERROR: cv UO still points to SourceForge > > *From:*Jones, Andy [mailto:And...@li... > <mailto:And...@li...>] > *Sent:* Tuesday, April 05, 2016 4:21 AM > *To:* psi...@li... > <mailto:psi...@li...> > *Subject:* Re: [Psidev-pi-dev] mzid 1.2 updates > > Thanks Yasset, I’m in now, and pushed my updates. > > Best wishes > > Andy > > *From:*Yasset Perez-Riverol [mailto:yp...@eb...] > *Sent:* 05 April 2016 10:44 > *To:* Jones, Andy <jo...@li... > <mailto:jo...@li...>>; psi...@li... > <mailto:psi...@li...> > *Subject:* Re: [Psidev-pi-dev] mzid 1.2 updates > > Invitation sent > > On 05/04/2016 10:38, Jones, Andy wrote: > > In fact, I didn’t manage to push this yet to the repository, looks > like I don’t have access. I will hopefully upload this later on > today, if/when someone can give me access! > > Thanks > > Andy > > *From:* Jones, Andy [mailto:And...@li...] > *Sent:* 05 April 2016 10:10 > *To:* psi...@li... > <mailto:psi...@li...> > *Subject:* [Psidev-pi-dev] mzid 1.2 updates > > Hi all, > > I have linked up to GitHub now (at last), so I will start using > that location for all updates. If you would like to update your > example files, the schema, spec doc or anything else – please do > so via GIT (https://github.com/HUPO-PSI/mzIdentML). > > I have just updated the spec doc and XSD with minor changes that > are being discussed on the list. > > If you need access, send a mail to the list, and someone will do > this for you. I’m quite new to GitHub, so perhaps someone else can > help with this! > > Also, anyone know how to get GitHub to send the commit messages to > this list? > > Cheers > > Andy > > > > ------------------------------------------------------------------------------ > > > > _______________________________________________ > > Psidev-pi-dev mailing list > > Psi...@li... > <mailto:Psi...@li...> > > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev > > -- > Yasset Perez-Riverol PhD. > Bioinformatician > Proteomics Services Team, PRIDE Group European Bioinformatics > Institute (EMBL-EBI) > Wellcome Trust Genome Campus > Hinxton > Cambridge CB10 1SD > United Kingdom > Twitter: @ypriverol > > > ------------------------------------------------------------------------------ > Find and fix application performance issues faster with Applications Manager > Applications Manager provides deep performance insights into multiple tiers of > your business applications. It resolves application problems quickly and > reduces your MTTR. Get your free trial! > https://ad.doubleclick.net/ddm/clk/302982198;130105516;z > > > _______________________________________________ > Psidev-pi-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev -- *--* *Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER* *PhD student* *Medizinisches Proteom-Center* *DEPARTMENT Medical Bioinformatics* *Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum *Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554 *E-mail***ger...@ru... <mailto:ger...@ru...> www.medizinisches-proteom-center.de <http://www.medizinisches-proteom-center.de/> RUB Logo ANNOUNCEMENT de.NBI summer school September 2016: *Analysis of Mass-Spectrometric Data - * *Big Data Bioinformatics in Proteomics and Metabolomics* http://www.denbi.de/index.php/11-training-cat/95-lss2016 |
From: Mathias W. <not...@gi...> - 2016-06-16 15:53:38
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Thanks @germa for converting to obo. I added a readme to the subfolder, mentioning the active file is now the obo and csv should be versioned accordingly to help syncing up. Feel free to edit the README.md with instructions. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/44#issuecomment-226528831 |
From: Mathias W. <not...@gi...> - 2016-06-16 15:49:53
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fixing #44 You can view, comment on, or merge this pull request online at: https://github.com/HUPO-PSI/mzIdentML/pull/49 -- Commit Summary -- * moved XLMOD csv files to development subfolder * renamed the first and more extensive but incomplete collection of cross-link CV terms to XLMOD-draft.csv * added readme files to cv and subdirectories -- File Changes -- A cv/README.md (5) A cv/XLMOD-dev/README.md (5) R cv/XLMOD-dev/XLMOD-1.0.0.csv (0) R cv/XLMOD-dev/XLMOD-draft.csv (0) -- Patch Links -- https://github.com/HUPO-PSI/mzIdentML/pull/49.patch https://github.com/HUPO-PSI/mzIdentML/pull/49.diff --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/pull/49 |
From: Julian U. <not...@gi...> - 2016-06-16 15:24:11
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Merged #48. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/pull/48#event-694790445 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:14:42
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@lutzfischer can you re-check the validator to see if everything is now okay --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/24#issuecomment-226516566 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:13:32
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I have checked in the Excel file into the CV branch on GitHub but this needs a bit more work. @edeutsch could you take another look next? --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/25#issuecomment-226516167 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:12:02
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Solved --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/37#issuecomment-226515649 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:11:58
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Closed #37. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/37#event-694771618 |
From: Mathias W. <not...@gi...> - 2016-06-16 15:10:12
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merged here after merge of #45 --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/pull/46#issuecomment-226515075 |
From: Mathias W. <not...@gi...> - 2016-06-16 15:10:10
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Merged #46. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/pull/46#event-694768947 |
From: Juan A. V. <not...@gi...> - 2016-06-16 15:10:07
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I will contact Gorka --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/41#issuecomment-226514971 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:08:48
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Closed #43. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/43#event-694766640 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:08:35
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All solved --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/43#issuecomment-226514548 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:07:41
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Merged #45. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/pull/45#event-694765289 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:05:18
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Closed #44. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/44#event-694761669 |
From: andrewrobertjones <not...@gi...> - 2016-06-16 15:05:16
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@mwalzer agreed to rename or put in sub-folder --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/44#issuecomment-226513507 |
From: Julian U. <not...@gi...> - 2016-06-16 15:03:16
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You can view, comment on, or merge this pull request online at: https://github.com/HUPO-PSI/mzIdentML/pull/48 -- Commit Summary -- * adding new versions of PIA example files * new version of PIA example files for protein_inference * new versions of PIA exports -- File Changes -- M examples/1_2examples/multi_search/MSGFplus_tandem.pia.1.2.mzid.gz (0) M examples/1_2examples/multi_search/mouse_dataset_-_combination.pia.1.2.mzid.gz (0) M examples/1_2examples/protein_inference/PIA_Rosetta_peak_list_2a_+_Ecoli_spectra.mzid.gz (0) M examples/1_2examples/protein_inference/PIA_Rosetta_peak_list_2a_-_neat.mzid.gz (0) M examples/1_2examples/protein_inference/PIA_Rosetta_peak_list_2b_+_Ecoli_spectra.mzid.gz (0) M examples/1_2examples/protein_inference/PIA_Rosetta_peak_list_2b_-_neat.mzid.gz (0) -- Patch Links -- https://github.com/HUPO-PSI/mzIdentML/pull/48.patch https://github.com/HUPO-PSI/mzIdentML/pull/48.diff --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/pull/48 |
From: Julian U. <not...@gi...> - 2016-06-16 14:22:04
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crash is fixed and shows an error in 72ba158dbcb155135f1fdb8397b915236f6a67dc --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/47#issuecomment-226499907 |
From: Julian U. <not...@gi...> - 2016-06-16 14:22:00
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Closed #47. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/47#event-694698074 |
From: Mathias W. <not...@gi...> - 2016-06-16 14:07:05
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I read there something about mzid 1.1 - is also related #41? --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/HUPO-PSI/mzIdentML/issues/47#issuecomment-226495475 |
From: Gerhard M. <not...@gi...> - 2016-06-16 13:57:40
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--- You are receiving this because you are subscribed to this thread. View it on GitHub: https://github.com/HUPO-PSI/mzIdentML/releases/tag/mzIdentMLValidator_GUI_v1.4.19-SNAPSHOT |