Hi everyone, another intended feature that is not in the current
specification that Pierre-Alain mentions is the ability to define custom
key-value pairs. Maybe Pierre-Alain can flesh this out, but from what I
gather, the documentation should go something like the below. Please
consider this and let’s discuss at the call tomorrow.
In order to use a custom key-value pair (i.e. the key is not in the CV) in
the sequence header blocks, it MUST be predefined in the file header.
The definition MUST be of the form:
# SpecificKey=KEYNAME:”KEYDEFINITION”:VALUEREGEXP
For example, to define a SecondaryStructure term:
# SpecificKey=SecondaryStructure:"Secondary structure element and
position":\([0-9]+\|[0-9]+\|[\w:]*\|\S+?\)
And then use:
\SecondaryStructure=(617|673|ncithesaurus:C47937|Helix)
Pierre-Alain, did I capture this correctly?
The regexp part will be tricky..
Thanks,
Eric
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