Thread: Re: [Psidev-ms-dev] PSI-MSS WG call deferred 1 week (Page 2)

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Fine for me
Pierre-Alain

Eric Deutsch wrote:
>
> Hi everyone, due to a schedule change, I cannot host this week’s 
> conference call. Let’s defer until next week.  Pierre-Alain, can we 
> discuss the MIAPE-MS revision next week? We are making progress here 
> on our TraML implementation. Any other bits on progress on that front 
> to report?
>
>  
>
> Thanks,
>
> Eric
>
>  
>
>  
>
>  
>
> *From:* Eric Deutsch [mailto:ede...@sy... 
> <mailto:ede...@sy...>]
> *Sent:* Tuesday, November 17, 2009 8:40 AM
> *To:* Mass spectrometry standard development
> *Cc:* Eric Deutsch
> *Subject:* PSI-MSS WG call notes
>
>  
>
> Present: Matt, Eric, Pierre-Alain
>
>  
>
> 1) mzML 1.1.0
>
> - Manuscript in preparation
>
> - Were Shimadzu items handled?
>
> + Matt will add Shimadzu Biotech software & MALDI solutions
>
> - Other items?
>
> + What about lock mass data?
>
> + Add a “lock-mass corrected spectrum” term that can be added to each 
> scan if appropriate? Matt will send proposal
>
>  
>
> + Summary of msconvert support for conversion to mzML. Latest summary:
>
>    http://proteowizard.sourceforge.net/technical/formats/
>
> + 5 major vendors fully supported. Missing: ABI TOF-TOF, Shimadzu, Hitachi
>
>  
>
> ----
>
> 2) MIAPE-MS revision
>
> - Discussion with journal editors happened in Toronto.
>
> - We need to work toward a new release of MIAPE-MS
>
> + Pierre-Alain will make revisions and present document to WG for 
> discussion by Dec 1
>
>  
>
> ----
>
> 3) TraML development
>
> - Version 0.9.1 is available at 
> http://www.psidev.info/index.php?q=node/405
>
> - Should we switch to first-letter capital for all elements as seems 
> to be the custom everywhere else in PSI except mzML?
>
> - Aim to submit specification to document process by end of November
>
> - Implementations?
>
>   - Matt will implement in ProteoWizard by end of November?
>
>   - Andreas will implement in OpenMS and update on-line validator
>
>   - ISB implementation in ATAQS nearly done
>
>   - Jim will implement as a test
>
>   - David Cox at Sciex will test implement?
>
> - What do we do with the <interpretation> cvParams insufficiency problem?
>
> - Maybe Andreas can help with inclusion/exclusion examples
>
> - There are some mapping file validation errors that need to be fixed 
> (mapping file problems)
>
> + Eric will fix these issues
>
> - Are we ready to update validator page?: 
> http://www.psidev.info/index.php?q=node/304
>
>  
>
>  
>
> *From:* Eric Deutsch [mailto:ede...@sy... 
> <mailto:ede...@sy...>]
> *Sent:* Monday, November 16, 2009 11:45 PM
> *To:* 'Mass spectrometry standard development'
> *Cc:* 'Eric Deutsch'
> *Subject:* PSI-MSS WG call reminder
>
>  
>
> Hi everyone, the next PSI Mass Spectrometry Standards Working Group 
> call will be Tuesday 8am PDT:
>
>  
>
> http://www.timeanddate.com/worldclock/fixedtime.html?day=17&month=11&year=2009&hour=16&min=0&sec=0&p1=136 
> <http://www.timeanddate.com/worldclock/fixedtime.html?day=17&month=11&year=2009&hour=16&min=0&sec=0&p1=136>
>
>  
>
> 08:00 San Francisco
>
> 11:00 New York
>
> 16:00 London
>
> 17:00 Geneva
>
>  
>
> + Germany: 08001012079
>
> + Switzerland: 0800000860
>
> + UK: 08081095644
>
> + USA: 1-866-314-3683
>
> Generic international: +44 2083222500 (UK number)
>
>  
>
> access code: 297427 #
>
>  
>
> Agenda:
>
> 1) mzML 1.1.0
>
> - Manuscript in preparation
>
> - Were Shimadzu items handled?
>
> - Other items?
>
>  
>
> ----
>
> 2) MIAPE-MS revision
>
> - Discussion with journal editors was Monday. Results are in.
>
> - We need to work toward a new release of MIAPE-MS
>
>  
>
> ----
>
> 3) TraML development
>
> - Version 0.9.1 is available at 
> http://www.psidev.info/index.php?q=node/405
>
> - Should we switch to first-letter capital for all elements as seems 
> to be the custom everywhere else in PSI except mzML?
>
> - Aim to submit specification to document process by end of November
>
> - Implementations?
>
>   - Matt will implement in ProteoWizard
>
>   - Andreas will implement in OpenMS and update on-line validator
>
>   - ISB implementation in ATAQS nearly done
>
>   - Jim will implement as a test
>
>   - David Cox at Sciex will test implement?
>
> - What do we do with the <interpretation> cvParams insufficiency problem?
>
> - Maybe Andreas can help with inclusion/exclusion examples
>
> - There are some mapping file validation errors that need to be fixed 
> (mapping file problems)
>
> - Are we ready to update validator page?: 
> http://www.psidev.info/index.php?q=node/304
>
>  
>
>  
>
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>
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