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From: Pierre-Alain B. <pie...@is...> - 2009-01-27 16:14:50
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Hi Eric, I'm away from home and office and have difficulties to connect my mobile phone to the calling number (the provider I'm connecting to now does not seem to accept the toll free numbers . GRRR!). Sorry for this, I might miss the call Pierre-Alain Eric Deutsch wrote: > > Hi everyone, the next PSI Mass Spectrometry Standards Working Group > call will be Tuesday 8am PST: > > > > http://www.timeanddate.com/worldclock/fixedtime.html?day=27&month=01&year=2009&hour=16&min=0&sec=0&p1=136 > <http://www.timeanddate.com/worldclock/fixedtime.html?day=27&month=01&year=2009&hour=16&min=0&sec=0&p1=136> > > > > + Germany: 08001012079 > > + Switzerland: 0800000860 > > + UK: 08081095644 > > + USA: 1-866-314-3683 > > Generic international: +44 2083222500 (UK number) > > > > access code: 297427 > > > > Agenda: > > - What still needs to be addressed before submission? > > - Update of schema to explicit typing (no functional change?) > > - Fredrik proposes a change to schema for "neutral loss / SRM scans > revisited" (01-23) > > - Problem with Thermo native ID format (01-14) > > - ASMS abstract > > - New terms: "sum peak picking" and "max peak picking" under "peak > picking" (2) (01-23) > > (or height and area?) > > - Resolve "MSn spectrum" problem (01-23) > > - Retention time unit problem (01-23) > > - Marc suggests adding some additional units (01-23) > > - Issue tracker: > https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse > <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> > > - Next call? Feb 3? > > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by: > SourcForge Community > SourceForge wants to tell your story. > http://p.sf.net/sfu/sf-spreadtheword > ------------------------------------------------------------------------ > > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > |
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From: Eric D. <ede...@sy...> - 2009-01-27 16:32:30
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Hi everyone, come on in, Juan Antonio has started the call for us. Thanks! Eric > From: Eric Deutsch [mailto:ede...@sy...] > > Hi everyone, sorry for the snag. I can't get ahold of the EBI folks, who > are > the only ones able to start the call. Please all hang up and just monitor > your email. I'll email if I can find someone to start the call. > > Thanks! > Eric > > > -----Original Message----- > > From: Matthew Chambers [mailto:mat...@va...] > > Sent: Tuesday, January 27, 2009 8:15 AM > > To: Mass spectrometry standard development > > Subject: Re: [Psidev-ms-dev] PSI-MSS WG Tuesday call reminder > > > > Who runs the conference service? It would be nice if a customer service > > representative could start the call in a pinch... > > > > -Matt > > > > > > Marc Sturm wrote: > > > Yes, Fredric and me too... > > > > > > Shofstahl, Jim wrote: > > > > > >> I was wondering if anybody else is enjoying the music this morning? > > >> > > >> > > >> > > >> Jim Shofstahl > > >> > > >> > > >> > > >> *From:* Eric Deutsch [mailto:ede...@sy...] > > >> *Sent:* Monday, January 26, 2009 12:38 PM > > >> *To:* 'Mass spectrometry standard development' > > >> *Cc:* 'Eric Deutsch' > > >> *Subject:* [Psidev-ms-dev] PSI-MSS WG Tuesday call reminder > > >> > > >> > > >> > > >> Hi everyone, the next PSI Mass Spectrometry Standards Working Group > > >> call will be Tuesday 8am PST: > > >> > > >> > > >> > > >> > > > http://www.timeanddate.com/worldclock/fixedtime.html?day=27&month=01&year= > > 2009&hour=16&min=0&sec=0&p1=136 > > >> > > > <http://www.timeanddate.com/worldclock/fixedtime.html?day=27&month=01&year > > =2009&hour=16&min=0&sec=0&p1=136> > > >> > > >> > > >> > > >> + Germany: 08001012079 > > >> > > >> + Switzerland: 0800000860 > > >> > > >> + UK: 08081095644 > > >> > > >> + USA: 1-866-314-3683 > > >> > > >> Generic international: +44 2083222500 (UK number) > > >> > > >> > > >> > > >> access code: 297427 > > >> > > >> > > >> > > >> Agenda: > > >> > > >> - What still needs to be addressed before submission? > > >> > > >> - Update of schema to explicit typing (no functional change?) > > >> > > >> - Fredrik proposes a change to schema for "neutral loss / SRM scans > > >> revisited" (01-23) > > >> > > >> - Problem with Thermo native ID format (01-14) > > >> > > >> - ASMS abstract > > >> > > >> - New terms: "sum peak picking" and "max peak picking" under "peak > > >> picking" (2) (01-23) > > >> > > >> (or height and area?) > > >> > > >> - Resolve "MSn spectrum" problem (01-23) > > >> > > >> - Retention time unit problem (01-23) > > >> > > >> - Marc suggests adding some additional units (01-23) > > >> > > >> - Issue tracker: > > >> > > https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse > > >> > > > <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> > > >> > > >> - Next call? Feb 3? > > >> > > >> > > >> > > >> --------------------------------------------------------------------- > -- > > - > > >> > > >> --------------------------------------------------------------------- > -- > > ------- > > >> This SF.net email is sponsored by: > > >> SourcForge Community > > >> SourceForge wants to tell your story. > > >> http://p.sf.net/sfu/sf-spreadtheword > > >> --------------------------------------------------------------------- > -- > > - > > >> > > >> _______________________________________________ > > >> Psidev-ms-dev mailing list > > >> Psi...@li... > > >> https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > >> > > >> > > > > > > ---------------------------------------------------------------------- > -- > > ------ > > > This SF.net email is sponsored by: > > > SourcForge Community > > > SourceForge wants to tell your story. > > > http://p.sf.net/sfu/sf-spreadtheword > > > _______________________________________________ > > > Psidev-ms-dev mailing list > > > Psi...@li... > > > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > > > > > > > > > ------------------------------------------------------------------------ > -- > > ---- > > This SF.net email is sponsored by: > > SourcForge Community > > SourceForge wants to tell your story. > > http://p.sf.net/sfu/sf-spreadtheword > > _______________________________________________ > > Psidev-ms-dev mailing list > > Psi...@li... > > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev |
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From: Shofstahl, J. <jim...@th...> - 2009-01-27 16:35:03
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Eric, I have another call that started at 8:30 that I have to participate in - so I won't be able to attend. Jim Shofstahl -----Original Message----- From: Eric Deutsch [mailto:ede...@sy...] Sent: Tuesday, January 27, 2009 8:32 AM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: Re: [Psidev-ms-dev] PSI-MSS WG Tuesday call reminder Hi everyone, come on in, Juan Antonio has started the call for us. Thanks! Eric > From: Eric Deutsch [mailto:ede...@sy...] > > Hi everyone, sorry for the snag. I can't get ahold of the EBI folks, who > are > the only ones able to start the call. Please all hang up and just monitor > your email. I'll email if I can find someone to start the call. > > Thanks! > Eric > > > -----Original Message----- > > From: Matthew Chambers [mailto:mat...@va...] > > Sent: Tuesday, January 27, 2009 8:15 AM > > To: Mass spectrometry standard development > > Subject: Re: [Psidev-ms-dev] PSI-MSS WG Tuesday call reminder > > > > Who runs the conference service? It would be nice if a customer service > > representative could start the call in a pinch... > > > > -Matt > > > > > > Marc Sturm wrote: > > > Yes, Fredric and me too... > > > > > > Shofstahl, Jim wrote: > > > > > >> I was wondering if anybody else is enjoying the music this morning? > > >> > > >> > > >> > > >> Jim Shofstahl > > >> > > >> > > >> > > >> *From:* Eric Deutsch [mailto:ede...@sy...] > > >> *Sent:* Monday, January 26, 2009 12:38 PM > > >> *To:* 'Mass spectrometry standard development' > > >> *Cc:* 'Eric Deutsch' > > >> *Subject:* [Psidev-ms-dev] PSI-MSS WG Tuesday call reminder > > >> > > >> > > >> > > >> Hi everyone, the next PSI Mass Spectrometry Standards Working Group > > >> call will be Tuesday 8am PST: > > >> > > >> > > >> > > >> > > > http://www.timeanddate.com/worldclock/fixedtime.html?day=27&month=01&year= > > 2009&hour=16&min=0&sec=0&p1=136 > > >> > > > <http://www.timeanddate.com/worldclock/fixedtime.html?day=27&month=01&year > > =2009&hour=16&min=0&sec=0&p1=136> > > >> > > >> > > >> > > >> + Germany: 08001012079 > > >> > > >> + Switzerland: 0800000860 > > >> > > >> + UK: 08081095644 > > >> > > >> + USA: 1-866-314-3683 > > >> > > >> Generic international: +44 2083222500 (UK number) > > >> > > >> > > >> > > >> access code: 297427 > > >> > > >> > > >> > > >> Agenda: > > >> > > >> - What still needs to be addressed before submission? > > >> > > >> - Update of schema to explicit typing (no functional change?) > > >> > > >> - Fredrik proposes a change to schema for "neutral loss / SRM scans > > >> revisited" (01-23) > > >> > > >> - Problem with Thermo native ID format (01-14) > > >> > > >> - ASMS abstract > > >> > > >> - New terms: "sum peak picking" and "max peak picking" under "peak > > >> picking" (2) (01-23) > > >> > > >> (or height and area?) > > >> > > >> - Resolve "MSn spectrum" problem (01-23) > > >> > > >> - Retention time unit problem (01-23) > > >> > > >> - Marc suggests adding some additional units (01-23) > > >> > > >> - Issue tracker: > > >> > > https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse > > >> > > > <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> > > >> > > >> - Next call? Feb 3? > > >> > > >> > > >> > > >> --------------------------------------------------------------------- > -- > > - > > >> > > >> --------------------------------------------------------------------- > -- > > ------- > > >> This SF.net email is sponsored by: > > >> SourcForge Community > > >> SourceForge wants to tell your story. > > >> http://p.sf.net/sfu/sf-spreadtheword > > >> --------------------------------------------------------------------- > -- > > - > > >> > > >> _______________________________________________ > > >> Psidev-ms-dev mailing list > > >> Psi...@li... > > >> https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > >> > > >> > > > > > > ---------------------------------------------------------------------- > -- > > ------ > > > This SF.net email is sponsored by: > > > SourcForge Community > > > SourceForge wants to tell your story. > > > http://p.sf.net/sfu/sf-spreadtheword > > > _______________________________________________ > > > Psidev-ms-dev mailing list > > > Psi...@li... > > > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > > > > > > > > > ------------------------------------------------------------------------ > -- > > ---- > > This SF.net email is sponsored by: > > SourcForge Community > > SourceForge wants to tell your story. > > http://p.sf.net/sfu/sf-spreadtheword > > _______________________________________________ > > Psidev-ms-dev mailing list > > Psi...@li... > > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ Psidev-ms-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev |
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From: Eric D. <ede...@sy...> - 2009-02-02 22:18:02
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PST: http://www.timeanddate.com/worldclock/fixedtime.html?day=03 <http://www.timeanddate.com/worldclock/fixedtime.html?day=03&month=03&year=2 009&hour=16&min=0&sec=0&p1=136> &month=03&year=2009&hour=16&min=0&sec=0&p1=136 + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - What still needs to be addressed before submission? - What is the final units decision? Allow a very small number of explicit specific units? Allow both sec and min in some cases? Is Marc's most recent proposal fine? - Need to update example files for final units decision - Update of schema to explicit typing (no functional change?) - ASMS abstract must be submitted this week (by Matt?) - Update web site and spec doc for final decisions - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - Next call? Feb 10? |
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From: Eric D. <ede...@sy...> - 2009-02-09 23:56:18
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PST: http://www.timeanddate.com/worldclock/fixedtime.html?day=10 <http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=03&year=2 009&hour=16&min=0&sec=0&p1=136> &month=03&year=2009&hour=16&min=0&sec=0&p1=136 + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - What still needs to be addressed before submission? - Better chromatogram support from Steffan - precursorList minOccurs=1 - Update web site and spec doc for final decisions - Other CV items - OBI - Marc's attempt to de-m/z term names - Exact procedure for obsoleting terms - Marc's CV errors - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - Next call? Feb 17? |
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From: Pierre-Alain B. <pie...@is...> - 2009-02-10 16:13:06
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hi, anyone online? PAB Eric Deutsch wrote: > > Hi everyone, the next PSI Mass Spectrometry Standards Working Group > call will be Tuesday 8am PST: > > > > http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=03&year=2009&hour=16&min=0&sec=0&p1=136 > <http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=03&year=2009&hour=16&min=0&sec=0&p1=136> > > > > + Germany: 08001012079 > > + Switzerland: 0800000860 > > + UK: 08081095644 > > + USA: 1-866-314-3683 > > Generic international: +44 2083222500 (UK number) > > > > access code: 297427 > > > > Agenda: > > - What still needs to be addressed before submission? > > - Better chromatogram support from Steffan > > - precursorList minOccurs=1 > > - Update web site and spec doc for final decisions > > - Other CV items > > - OBI > > - Marc's attempt to de-m/z term names > > - Exact procedure for obsoleting terms > > - Marc's CV errors > > - Issue tracker: > https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse > <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> > > - Next call? Feb 17? > > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > Create and Deploy Rich Internet Apps outside the browser with Adobe(R)AIR(TM) > software. With Adobe AIR, Ajax developers can use existing skills and code to > build responsive, highly engaging applications that combine the power of local > resources and data with the reach of the web. Download the Adobe AIR SDK and > Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com > ------------------------------------------------------------------------ > > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > |
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From: Steffen N. <sne...@ip...> - 2009-02-10 16:14:14
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On Tue, 2009-02-10 at 17:14 +0100, Pierre-Alain Binz wrote: > hi, anyone online? Yup. Steffen -- IPB Halle AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 |
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From: Matthew C. <mat...@va...> - 2009-02-10 16:14:34
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I'm here, enjoying the music. -Matt Pierre-Alain Binz wrote: > hi, anyone online? > PAB > > Eric Deutsch wrote: >> >> Hi everyone, the next PSI Mass Spectrometry Standards Working Group >> call will be Tuesday 8am PST: >> >> >> >> http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=03&year=2009&hour=16&min=0&sec=0&p1=136 >> <http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=03&year=2009&hour=16&min=0&sec=0&p1=136> >> >> >> >> + Germany: 08001012079 >> >> + Switzerland: 0800000860 >> >> + UK: 08081095644 >> >> + USA: 1-866-314-3683 >> >> Generic international: +44 2083222500 (UK number) >> >> >> >> access code: 297427 >> >> >> >> Agenda: >> >> - What still needs to be addressed before submission? >> >> - Better chromatogram support from Steffan >> >> - precursorList minOccurs=1 >> >> - Update web site and spec doc for final decisions >> >> - Other CV items >> >> - OBI >> >> - Marc's attempt to de-m/z term names >> >> - Exact procedure for obsoleting terms >> >> - Marc's CV errors >> >> - Issue tracker: >> https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse >> <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> >> >> - Next call? Feb 17? >> >> >> >> ------------------------------------------------------------------------ >> >> ------------------------------------------------------------------------------ >> Create and Deploy Rich Internet Apps outside the browser with Adobe(R)AIR(TM) >> software. With Adobe AIR, Ajax developers can use existing skills and code to >> build responsive, highly engaging applications that combine the power of local >> resources and data with the reach of the web. Download the Adobe AIR SDK and >> Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Psidev-ms-dev mailing list >> Psi...@li... >> https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev >> > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > Create and Deploy Rich Internet Apps outside the browser with Adobe(R)AIR(TM) > software. With Adobe AIR, Ajax developers can use existing skills and code to > build responsive, highly engaging applications that combine the power of local > resources and data with the reach of the web. Download the Adobe AIR SDK and > Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com > ------------------------------------------------------------------------ > > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > |
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From: Mike C. <tu...@gm...> - 2009-02-10 16:16:42
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I'm sitting on this call right now (just music at this point), and I discovered that the time specified by clicking on that cool link is 9am Pacific, even though the text below says 8am. So apparently it'll start in 45 minutes... (?) On Mon, Feb 9, 2009 at 5:56 PM, Eric Deutsch <ede...@sy...> wrote: > Hi everyone, the next PSI Mass Spectrometry Standards Working Group call > will be Tuesday 8am PST: > > > > http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=03&year=2009&hour=16&min=0&sec=0&p1=136 > > > > + Germany: 08001012079 > > + Switzerland: 0800000860 > > + UK: 08081095644 > > + USA: 1-866-314-3683 > > Generic international: +44 2083222500 (UK number) > > > > access code: 297427 > > > > Agenda: > > - What still needs to be addressed before submission? > > - Better chromatogram support from Steffan > > - precursorList minOccurs=1 > > - Update web site and spec doc for final decisions > > - Other CV items > > - OBI > > - Marc's attempt to de-m/z term names > > - Exact procedure for obsoleting terms > > - Marc's CV errors > > - Issue tracker: > https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse > > - Next call? Feb 17? > > > > ------------------------------------------------------------------------------ > Create and Deploy Rich Internet Apps outside the browser with > Adobe(R)AIR(TM) > software. With Adobe AIR, Ajax developers can use existing skills and code > to > build responsive, highly engaging applications that combine the power of > local > resources and data with the reach of the web. Download the Adobe AIR SDK and > Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > |
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From: Eric D. <ede...@sy...> - 2009-02-17 06:17:58
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 9am PST: PLEASE NOTE THE TIME CHANGE. ONE HOUR LATER THAN USUAL DUE TO CONFLICT WITH PSI SG. http://www.timeanddate.com/worldclock/fixedtime.html?day=17 <http://www.timeanddate.com/worldclock/fixedtime.html?day=17&month=02&year=2 009&hour=17&min=0&sec=0&p1=136> &month=02&year=2009&hour=17&min=0&sec=0&p1=136 + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Ready to submit today? - Darren has updated the examples. Marc has updated the CV items - Very few comments on previous post. Just a few corrections due to example files - Matt's proposed adjustment to nativeID - A few straggling unit issues from Marc - Matt's suggested adding a few more chromatogram terms - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - TraML discussion - Next call? Feb 24? |
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From: Eric D. <ede...@sy...> - 2009-02-17 17:53:43
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Notes from today's call: Present: Pierre-Alain, Eric, Darren, Marc, Jim, - Update on Steering Group results + SG will develop an intermediate category between minor and major updates. This will go through a fast-track review that is shorter than the full 30 + 60 day review - Ready to submit today? + Still need a covering letter listing the changes to schema + Have in hand example updates and figure updates + Eric will write first draft of list of change and send out for refinement - Darren has updated the examples. Marc has updated the CV items + done - Very few comments on previous post of RC3. Just a few corrections due to example files + Only comment were inconsistency of examples documents. Fixed. + Also inconsistency of embedded figures. Fixed. - Matt's proposed adjustment to nativeID + defer until Matt present - A few straggling unit issues from Marc + Eric contact unit ontology person about volt/meter + Defer "detector resolution" term units. Need to make sure we even have the term defined correctly. Let's gather all related terms and discuss again sometime + Approve adding counts/second as allowed terms - Matt's suggested adding a few more chromatogram binary data array types + Seems fine. Wait until Matt is on the call for more detailed discussion. + Pierre-Alain mentions potential overlap with sepML that should be checked. - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse + Nothing that needs attention - Recent emails + okay to add lowest/highest wavelength value attributes to chromatogram. Marc will add. - TraML discussion + Link to spec doc is broken + Should there be a MIAPE module? Probably eventually but maybe it's too early. Would be a good agenda item for the PSI meeting + Eric add link to TraML from working group + Have input from Matt Chambers and Brendan MacLean and ISB + Would like to get input from Steffen Neumman and Jim Shofstahl + Should contact ToxID group for input. Jim can facilitate that. + Additional contacts: ABI: Ron Bonner, David Lavorato; Bruker: Carsten Baessmann - Next call? Feb 24? + Yes. Probably at the usual time at 8am PST (but possibly a time shift to 9am again) + Darren will be at US HUPO and will have a mzML 1.1 section on his poster _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Monday, February 16, 2009 10:18 PM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call reminder Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 9am PST: PLEASE NOTE THE TIME CHANGE. ONE HOUR LATER THAN USUAL DUE TO CONFLICT WITH PSI SG. http://www.timeanddate.com/worldclock/fixedtime.html?day=17 <http://www.timeanddate.com/worldclock/fixedtime.html?day=17&month=02&year=2 009&hour=17&min=0&sec=0&p1=136> &month=02&year=2009&hour=17&min=0&sec=0&p1=136 + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Ready to submit today? - Darren has updated the examples. Marc has updated the CV items - Very few comments on previous post. Just a few corrections due to example files - Matt's proposed adjustment to nativeID - A few straggling unit issues from Marc - Matt's suggested adding a few more chromatogram terms - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - TraML discussion - Next call? Feb 24? |
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From: Steffen N. <sne...@ip...> - 2009-02-17 20:11:19
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On Tue, 2009-02-17 at 09:53 -0800, Eric Deutsch wrote: > Notes from today’s call: [...] > - Matt’s suggested adding a few more chromatogram binary data array > types ... > + Pierre-Alain mentions potential overlap with sepML that should be > checked. The proposed "chromatograms" encode some of the internal machine sensor / health (?!) information, i.e. flow rate, pump pressure, gradient composition. IMHO they are valuable in the context of the MS measurement, perhaps as quality control information. > + Would like to get input from Steffen Neumman and Jim Shofstahl On what ? Yours, Steffen |
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From: Eric D. <ede...@sy...> - 2009-02-24 18:09:51
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Notes from today's call: Present: Matt, Jim, Darren, Fredrik, Pierre-Alain, Angel, Eric - Ready to submit today? + Darren is finishing updating example files + Eric will not submit today because a couple more items below need to be addressed - Validators? + Both ProDAC validator and OpenMS/TOPP validators are up are running and at 1.1 and linked from web site - PSI SG call + Meeting will be Apr 27-29 + We need to come up with an agenda for the MS track + review mzML and CV + Work on mzML manuscript + Revisit some MIAPE issues + Work on TraML - Example files updated? + Yes - Matt's proposed adjustment to nativeID + Email from 2009-02-11 9am PST + Move nativeID format from <fileContent> to <sourceFile> + Angel says that if we change the index to include both id and sourceFileRef, then the index would need the same + So we need to make sure that any two competing nativeIDs must never be able to be the same + Remove <sourceFileRefList> element from <run> and add attribute defaultSourceFileRef= to <run> + Eric will describe the two available options in an email and we'll vote - A few straggling unit issues from Marc - Matt's suggested adding a few more chromatogram terms + Email from 2009-02-13 12:35pm PST + Proposal to add "chromatographic flow rate array", etc. + tiny1 example should have units for intensity array, and validators fixed to catch this omission + Okay on the first 3. But the mix array is a problem. Or maybe okay with naming the solvent - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - TraML discussion - Next call? March 3? + Yes, March 3. Timeslot is difficult. + PSI steering group has reclaimed Tuesday 8am timeslot and with runup to PSI meeting will use it + Tuesday 9am is bad for Eric who has conflict and Pierre-Alain who needs to leave early? + Should we go back to Monday 8am? Eric will consult with the regulars and announce. _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Tuesday, February 17, 2009 9:54 AM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call notes Notes from today's call: Present: Pierre-Alain, Eric, Darren, Marc, Jim, - Update on Steering Group results + SG will develop an intermediate category between minor and major updates. This will go through a fast-track review that is shorter than the full 30 + 60 day review - Ready to submit today? + Still need a covering letter listing the changes to schema + Have in hand example updates and figure updates + Eric will write first draft of list of change and send out for refinement - Darren has updated the examples. Marc has updated the CV items + done - Very few comments on previous post of RC3. Just a few corrections due to example files + Only comment were inconsistency of examples documents. Fixed. + Also inconsistency of embedded figures. Fixed. - Matt's proposed adjustment to nativeID + defer until Matt present - A few straggling unit issues from Marc + Eric contact unit ontology person about volt/meter + Defer "detector resolution" term units. Need to make sure we even have the term defined correctly. Let's gather all related terms and discuss again sometime + Approve adding counts/second as allowed terms - Matt's suggested adding a few more chromatogram binary data array types + Seems fine. Wait until Matt is on the call for more detailed discussion. + Pierre-Alain mentions potential overlap with sepML that should be checked. - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse + Nothing that needs attention - Recent emails + okay to add lowest/highest wavelength value attributes to chromatogram. Marc will add. - TraML discussion + Link to spec doc is broken + Should there be a MIAPE module? Probably eventually but maybe it's too early. Would be a good agenda item for the PSI meeting + Eric add link to TraML from working group + Have input from Matt Chambers and Brendan MacLean and ISB + Would like to get input from Steffen Neumman and Jim Shofstahl + Should contact ToxID group for input. Jim can facilitate that. + Additional contacts: ABI: Ron Bonner, David Lavorato; Bruker: Carsten Baessmann - Next call? Feb 24? + Yes. Probably at the usual time at 8am PST (but possibly a time shift to 9am again) + Darren will be at US HUPO and will have a mzML 1.1 section on his poster _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Monday, February 16, 2009 10:18 PM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call reminder Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 9am PST: PLEASE NOTE THE TIME CHANGE. ONE HOUR LATER THAN USUAL DUE TO CONFLICT WITH PSI SG. http://www.timeanddate.com/worldclock/fixedtime.html?day=17 <http://www.timeanddate.com/worldclock/fixedtime.html?day=17&month=02&year=2 009&hour=17&min=0&sec=0&p1=136> &month=02&year=2009&hour=17&min=0&sec=0&p1=136 + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Ready to submit today? - Darren has updated the examples. Marc has updated the CV items - Very few comments on previous post. Just a few corrections due to example files - Matt's proposed adjustment to nativeID - A few straggling unit issues from Marc - Matt's suggested adding a few more chromatogram terms - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - TraML discussion - Next call? Feb 24? |
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From: Eric D. <ede...@sy...> - 2009-02-24 00:59:43
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 9am PST: PLEASE NOTE THE TIME CHANGE. ONE HOUR LATER THAN USUAL DUE TO CONFLICT WITH PSI SG. http://www.timeanddate.com/worldclock/fixedtime.html?day=24 <http://www.timeanddate.com/worldclock/fixedtime.html?day=24&month=02&year=2 009&hour=17&min=0&sec=0&p1=136> &month=02&year=2009&hour=17&min=0&sec=0&p1=136 09:00 San Francisco 12:00 New York 17:00 London 18:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Ready to submit today? - Validators? - Example files updated? - Matt's proposed adjustment to nativeID - A few straggling unit issues from Marc - Matt's suggested adding a few more chromatogram terms - Issue tracker: https://sourceforge.net/tracker/?atid=1126041 <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse> &group_id=65472&func=browse - TraML discussion - Next call? March 3? |
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From: Eric D. <ede...@sy...> - 2009-03-03 01:14:54
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PST: (this is back to our regular time. I don't *think* there's a conflict with PSI SG) http://www.timeanddate.com/worldclock/fixedtime.html?day=3 <http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=200 9&hour=16&min=0&sec=0&p1=136> &month=3&year=2009&hour=16&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 16:00 London 17:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Decision of where to put nativeID format <cvParam> - Decision on sourceFileRefList - Example files updated? - Ready to submit? - A few straggling unit issues from Marc - Next call? March 10? |
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From: Eric D. <ede...@sy...> - 2009-03-03 16:54:51
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Present: Matt, Fredrik, Eric, Jim, Darren, Topic: - Decision of where to put nativeID format <cvParam> + Adopt Darren's suggestion of 2/26 3:44p: always only specify nativeID format in <sourceFile> and use "no id format" term is N/A + Eric make sure documentation says what to do with a folder of files: each file included as source files + Darren will adjust the example files + Eric will add the CV term & email Darren + Eric will adjust mapping file - Decision on sourceFileRefList + Remove <sourceFileRefList> element and below + Add <run> attribute defaultSourceFileRef= + Document that in the case of multiple files in a folder, or wiff & wiff.scan, specify the key file (wiff, func001.dat, analysis.yep) + Can specify all files as <sourceFiles> at the top, but only reference the key one. + Matt will make the xsd changes and check in and email Eric + Darren will update examples & email Eric + Eric will update the Documentation with latest schema and also rules about which file to reference - Example files updated? + Darren will update and post + Fredrik will update and post - Ready to submit? + When these things are done, then Eric will submit - A few straggling unit issues from Marc + Darren will ask Jim directory about orbi/FT intensitities + Defer rest until next week - Next call? March 10? + Yes. Probably 8am PST March 10 _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Monday, March 02, 2009 5:15 PM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call reminder Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PST: (this is back to our regular time. I don't *think* there's a conflict with PSI SG) http://www.timeanddate.com/worldclock/fixedtime.html?day=3 <http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=200 9&hour=16&min=0&sec=0&p1=136> &month=3&year=2009&hour=16&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 16:00 London 17:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Decision of where to put nativeID format <cvParam> - Decision on sourceFileRefList - Example files updated? - Ready to submit? - A few straggling unit issues from Marc - Next call? March 10? |
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From: Fredrik L. <Fre...@im...> - 2009-03-04 10:06:17
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The peak list file examples and the scan type examples are now updated with native ID type for source files, removal of the sourceFileRefList, and addition of defaultSourceFileRef. Not validated with new mapping file yet, though. Fredrik Eric Deutsch wrote: > > Present: Matt, Fredrik, Eric, Jim, Darren, > > > > Topic: > > - Decision of where to put nativeID format <cvParam> > > + Adopt Darren’s suggestion of 2/26 3:44p: always only specify > nativeID format in <sourceFile> and use > > “no id format” term is N/A > > + Eric make sure documentation says what to do with a folder of files: > each file included as source files > > + Darren will adjust the example files > > + Eric will add the CV term & email Darren > > + Eric will adjust mapping file > > - Decision on sourceFileRefList > > + Remove <sourceFileRefList> element and below > > + Add <run> attribute defaultSourceFileRef= > > + Document that in the case of multiple files in a folder, or wiff & > wiff.scan, specify the key file (wiff, func001.dat, analysis.yep) > > + Can specify all files as <sourceFiles> at the top, but only > reference the key one. > > + Matt will make the xsd changes and check in and email Eric > > + Darren will update examples & email Eric > > + Eric will update the Documentation with latest schema and also rules > about which file to reference > > - Example files updated? > > + Darren will update and post > > + Fredrik will update and post > > - Ready to submit? > > + When these things are done, then Eric will submit > > - A few straggling unit issues from Marc > > + Darren will ask Jim directory about orbi/FT intensitities > > + Defer rest until next week > > - Next call? March 10? > > + Yes. Probably 8am PST March 10 > > > > > > > > > > > > > > ------------------------------------------------------------------------ > > *From:* Eric Deutsch [mailto:ede...@sy...] > *Sent:* Monday, March 02, 2009 5:15 PM > *To:* 'Mass spectrometry standard development' > *Cc:* 'Eric Deutsch' > *Subject:* PSI-MSS WG Tuesday call reminder > > > > Hi everyone, the next PSI Mass Spectrometry Standards Working Group > call will be Tuesday 8am PST: > > > > (this is back to our regular time. I don’t **think** there’s a > conflict with PSI SG) > > > > http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=2009&hour=16&min=0&sec=0&p1=136 > <http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=2009&hour=16&min=0&sec=0&p1=136> > > > > 08:00 San Francisco > > 11:00 New York > > 16:00 London > > 17:00 Western Europe > > > > + Germany: 08001012079 > > + Switzerland: 0800000860 > > + UK: 08081095644 > > + USA: 1-866-314-3683 > > Generic international: +44 2083222500 (UK number) > > > > access code: 297427 > > > > Agenda: > > - Decision of where to put nativeID format <cvParam> > > - Decision on sourceFileRefList > > - Example files updated? > > - Ready to submit? > > - A few straggling unit issues from Marc > > - Next call? March 10? > > > |
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From: Eric D. <ede...@sy...> - 2009-03-10 15:22:10
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Present: Matt, Jim, Marc, Eric, Darren Topics: - Address latest issues - Wilfred's issue of <product> needs <selectIonList> + Eric will contact Wilfred and Fredrik and Matt. Must come up with an example use case + Eric will update the mapping file per Wilfred's suggestion - Example files updated? + Matt and Darren will update the examples today + Marc added volt per meter to the electric field strength to CV - Submit! - A few straggling unit issues from Marc + Orbitrap units should just be number of counts + Darren will go ahead and create one example file requested by Marc with 6 spectra all encoded in the six different possible datatypes and post it. - Next call? March 17? +Yes, if needed 8am PDT. _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Tuesday, March 03, 2009 8:55 AM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call notes Present: Matt, Fredrik, Eric, Jim, Darren, Topic: - Decision of where to put nativeID format <cvParam> + Adopt Darren's suggestion of 2/26 3:44p: always only specify nativeID format in <sourceFile> and use "no id format" term is N/A + Eric make sure documentation says what to do with a folder of files: each file included as source files + Darren will adjust the example files + Eric will add the CV term & email Darren + Eric will adjust mapping file - Decision on sourceFileRefList + Remove <sourceFileRefList> element and below + Add <run> attribute defaultSourceFileRef= + Document that in the case of multiple files in a folder, or wiff & wiff.scan, specify the key file (wiff, func001.dat, analysis.yep) + Can specify all files as <sourceFiles> at the top, but only reference the key one. + Matt will make the xsd changes and check in and email Eric + Darren will update examples & email Eric + Eric will update the Documentation with latest schema and also rules about which file to reference - Example files updated? + Darren will update and post + Fredrik will update and post - Ready to submit? + When these things are done, then Eric will submit - A few straggling unit issues from Marc + Darren will ask Jim directory about orbi/FT intensitities + Defer rest until next week - Next call? March 10? + Yes. Probably 8am PST March 10 _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Monday, March 02, 2009 5:15 PM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call reminder Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PST: (this is back to our regular time. I don't *think* there's a conflict with PSI SG) http://www.timeanddate.com/worldclock/fixedtime.html?day=3 <http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=200 9&hour=16&min=0&sec=0&p1=136> &month=3&year=2009&hour=16&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 16:00 London 17:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Decision of where to put nativeID format <cvParam> - Decision on sourceFileRefList - Example files updated? - Ready to submit? - A few straggling unit issues from Marc - Next call? March 10? |
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From: Eric D. <ede...@sy...> - 2009-03-24 15:56:27
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Notes from today's call. Present: Fredrik, Jim, Wilfred, Pierre-Alain, Steffen, Eric, Darren, Marc + Steffen will check that his examples still work + ICMS: International Conference on Mass Spectrometry soon in Bremen in September. Steffen may do a poster + German Mass Spectrometry conference occurred early March: there was a presentation on imaging mzML (imzML) + imzML is still based on mzML 1.0 but they will update it to mzML 1.1 - Approve scanWindow dx:ScanWindowType -> dx:paramType + Eric fixed that. No objections here - Approve isolation window target m/z, lower offset, upper offset + Fine + Eric will obsolete the older terms - unit.obo rev 1.19 issue to be solved + Fixed in 1.20. Eric will update psi-ms.obo to reflect 1.20 - scan time -> scan start time change, and elution time added + Marc did this. Fine. - CV items + Wilfred says "dwell time" is an awkward location in the CV. Should be moved to spectrum type?? Fredrik agrees. + Wilfred will email out his recommended nativeID format to the list and it will be included as a term + The definition for run should be discussed and possibly modified for MALDI. Discuss with Matt and Lennart. - Mapping file items + Eric will make sure that the mapping file changes from Wilfred of 3/15 are applied to SVN - Example files updated? + Eric will make the changes to the CV and mapping file and email when done. + Marc and Fredrik will update validators and email + Darren and Wilfred and Steffen and Fredrik will update and validate examples and email with done + Then Eric will update the documentation and email when done - No more open issues? + No, except SRM file size, see below. - Submit! - Turku plans + Fredrik, Marc, Jim, Pierre-Alain, Eric will be there + Add to agenda also a discussion of SRM + We discussed the history of the current design of SRM encoding + Wilfred and Jim will try to come up with an arsenal of examples of original files and mzML converted files, showing the inflation of file size and we can consider ways to improve this at Turku - Next call? March 31? + Yes, same time. _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Tuesday, March 10, 2009 8:22 AM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call notes Present: Matt, Jim, Marc, Eric, Darren Topics: - Address latest issues - Wilfred's issue of <product> needs <selectIonList> + Eric will contact Wilfred and Fredrik and Matt. Must come up with an example use case + Eric will update the mapping file per Wilfred's suggestion - Example files updated? + Matt and Darren will update the examples today + Marc added volt per meter to the electric field strength to CV - Submit! - A few straggling unit issues from Marc + Orbitrap units should just be number of counts + Darren will go ahead and create one example file requested by Marc with 6 spectra all encoded in the six different possible datatypes and post it. - Next call? March 17? +Yes, if needed 8am PDT. _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Tuesday, March 03, 2009 8:55 AM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call notes Present: Matt, Fredrik, Eric, Jim, Darren, Topic: - Decision of where to put nativeID format <cvParam> + Adopt Darren's suggestion of 2/26 3:44p: always only specify nativeID format in <sourceFile> and use "no id format" term is N/A + Eric make sure documentation says what to do with a folder of files: each file included as source files + Darren will adjust the example files + Eric will add the CV term & email Darren + Eric will adjust mapping file - Decision on sourceFileRefList + Remove <sourceFileRefList> element and below + Add <run> attribute defaultSourceFileRef= + Document that in the case of multiple files in a folder, or wiff & wiff.scan, specify the key file (wiff, func001.dat, analysis.yep) + Can specify all files as <sourceFiles> at the top, but only reference the key one. + Matt will make the xsd changes and check in and email Eric + Darren will update examples & email Eric + Eric will update the Documentation with latest schema and also rules about which file to reference - Example files updated? + Darren will update and post + Fredrik will update and post - Ready to submit? + When these things are done, then Eric will submit - A few straggling unit issues from Marc + Darren will ask Jim directory about orbi/FT intensitities + Defer rest until next week - Next call? March 10? + Yes. Probably 8am PST March 10 _____ From: Eric Deutsch [mailto:ede...@sy...] Sent: Monday, March 02, 2009 5:15 PM To: 'Mass spectrometry standard development' Cc: 'Eric Deutsch' Subject: PSI-MSS WG Tuesday call reminder Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PST: (this is back to our regular time. I don't *think* there's a conflict with PSI SG) http://www.timeanddate.com/worldclock/fixedtime.html?day=3 <http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=200 9&hour=16&min=0&sec=0&p1=136> &month=3&year=2009&hour=16&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 16:00 London 17:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Decision of where to put nativeID format <cvParam> - Decision on sourceFileRefList - Example files updated? - Ready to submit? - A few straggling unit issues from Marc - Next call? March 10? |
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From: Fredrik L. <Fre...@im...> - 2009-03-24 16:24:59
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Maybe 'dwell time' should be a 'scan attribute', but this generates a need to have a scan element for the spectrum, so probably storing it as a 'spectrum attribute' is more convenient (spectrum type would be incorrect, though)? I hope that dwell time cannot be set differently for different fragments (?), then it would need to be placed under Product. Thanks Fredrik Eric Deutsch wrote: > > > + Wilfred says “dwell time” is an awkward location in the CV. Should > be moved to spectrum type?? Fredrik agrees. > |
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From: Eric D. <ede...@sy...> - 2009-03-10 06:56:30
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PDT: (Note that the US is on Daylight Saving Time, but Europe is not, so the timing is a little different) http://www.timeanddate.com/worldclock/fixedtime.html?day=10 <http://www.timeanddate.com/worldclock/fixedtime.html?day=10&month=3&year=20 09&hour=15&min=0&sec=0&p1=136> &month=3&year=2009&hour=15&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 15:00 London 16:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Address latest issues - Example files updated? - Submit! - A few straggling unit issues from Marc - Next call? March 17? |
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From: Eric D. <ede...@sy...> - 2009-03-16 22:28:09
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PDT: (Note that the US is on Daylight Saving Time, but Europe is not, so the timing is a little different) http://www.timeanddate.com/worldclock/fixedtime.html?day=17 <http://www.timeanddate.com/worldclock/fixedtime.html?day=17&month=3&year=20 09&hour=15&min=0&sec=0&p1=136> &month=3&year=2009&hour=15&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 15:00 London 16:00 Western Europe + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Happy St. Patrick's Day! Soda bread will be served during the call. - Address latest issues - Scan time - scanWindow no cvParams? - CV items - Mapping file items - Example files updated? - Submit! - Next call? March 23? |
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From: Eric D. <ede...@sy...> - 2009-03-24 02:22:04
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PDT: (Note that the US is on Daylight Saving Time, but Europe is not, so the timing is a little different) http://www.timeanddate.com/worldclock/fixedtime.html?day=24 <http://www.timeanddate.com/worldclock/fixedtime.html?day=24&month=3&year=20 09&hour=15&min=0&sec=0&p1=136> &month=3&year=2009&hour=15&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 15:00 London 16:00 Geneva + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Approve scanWindow dx:ScanWindowType -> dx:paramType - Approve isolation window target m/z, lower offset, upper offset - unit.obo rev 1.19 issue to be solved - scan time -> scan start time change, and elution time added - CV items - Mapping file items - Example files updated? - No more open issues? - Submit! - Turku plans - Next call? March 31? |
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From: Eric D. <ede...@sy...> - 2009-04-20 23:22:26
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Hi everyone, the next PSI Mass Spectrometry Standards Working Group call will be Tuesday 8am PDT: http://www.timeanddate.com/worldclock/fixedtime.html?day=21 <http://www.timeanddate.com/worldclock/fixedtime.html?day=21&month=4&year=20 09&hour=16&min=0&sec=0&p1=136> &month=4&year=2009&hour=16&min=0&sec=0&p1=136 08:00 San Francisco 11:00 New York 16:00 London 17:00 Geneva + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 Generic international: +44 2083222500 (UK number) access code: 297427 Agenda: - Planning for Turku - Discuss agenda - imzML - TraML - mzML |
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From: Eric D. <ede...@sy...> - 2009-05-05 08:24:55
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Hi everyone, I have not been able to get things together for a call. We should keep trying to push ahead anyway and call next Tuesday for sure. Thanks, Eric |
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