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From: Steffen N. <sne...@ip...> - 2009-05-28 20:33:40
Attachments:
Image-CY9YCx
Image-hXh1nS
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Hi,
I tried to create an Eclipse EMF model
from the mzML RC6 XSD.
I haven't found out how to cut&paste the full error,
therefor these two screenshots :-(
The problem are extra spaces " " in the xpath expressions:
<xs:selector xpath=".//dx:precursor |.//dx:scan" />
^^
below is a patch which cleans those up.
Yours,
Steffen
--- mzML1.1.0.xsd 2009-05-28 22:25:33.000000000 +0200
+++ mzML1.1.0clean.xsd 2009-05-28 22:31:05.000000000 +0200
@@ -1029,7 +1029,7 @@
This is a reference to a source file in sourceFileList. It ensures that an id is present in the file and is one of the values defined in KEY_SOURCEFILE_ID.
</xs:documentation>
</xs:annotation>
- <xs:selector xpath=".//dx:precursor |.//dx:scan" />
+ <xs:selector xpath=".//dx:precursor|.//dx:scan" />
<xs:field xpath="@sourceFileRef" />
</xs:keyref>
<xs:keyref name="KEYREF_RUN_SAMPLEREF" refer="dx:KEY_SAMPLE_ID">
@@ -1056,7 +1056,7 @@
This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID.
</xs:documentation>
</xs:annotation>
- <xs:selector xpath="./dx:run/dx:spectrumList |./dx:run/dx:chromatogramList" />
+ <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" />
<xs:field xpath="@defaultDataProcessingRef" />
</xs:keyref>
<xs:keyref name="KEYREF_DPREF" refer="dx:KEY_DP_ID">
@@ -1065,7 +1065,7 @@
This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID.
</xs:documentation>
</xs:annotation>
- <xs:selector xpath=".//dx:spectrum |.//dx:chromatogram |.//dx:binaryDataArray" />
+ <xs:selector xpath=".//dx:spectrum|.//dx:chromatogram|.//dx:binaryDataArray" />
<xs:field xpath="@dataProcessingRef" />
</xs:keyref>
<xs:keyref name="KEYREF_CVREF" refer="dx:KEY_CV_ID">
@@ -1083,7 +1083,7 @@
This is a reference to the CV in cvList used for unit terms. It ensures that an id is present in the file and is one of the values defined in KEY_CV_ID.
</xs:documentation>
</xs:annotation>
- <xs:selector xpath=".//dx:cvParam |.//dx:userParam" />
+ <xs:selector xpath=".//dx:cvParam|.//dx:userParam" />
<xs:field xpath="@unitCvRef" />
</xs:keyref>
<xs:keyref name="KEYREF_RPGREF" refer="dx:KEY_RPG_ID">
@@ -1101,7 +1101,7 @@
This is a reference to an instrument configuration in instrumentConfigurationList. It ensures that an id is present in the file and is one of the values defined in KEY_IC_ID.
</xs:documentation>
</xs:annotation>
- <xs:selector xpath="./dx:run/dx:spectrumList |./dx:run/dx:chromatogramList" />
+ <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" />
<xs:field xpath="@defaultInstrumentConfigurationRef" />
</xs:keyref>
<xs:keyref name="KEYREF_ICREF" refer="dx:KEY_IC_ID">
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From: Steffen N. <sne...@ip...> - 2009-06-03 17:43:43
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Hi, Has this been fixed ? Yours, Steffen On Thu, 2009-05-28 at 22:32 +0200, Steffen Neumann wrote: > Hi, > > I tried to create an Eclipse EMF model > from the mzML RC6 XSD. > > I haven't found out how to cut&paste the full error, > therefor these two screenshots :-( > > The problem are extra spaces " " in the xpath expressions: > > <xs:selector xpath=".//dx:precursor |.//dx:scan" /> > ^^ > below is a patch which cleans those up. > > Yours, > Steffen > > > > --- mzML1.1.0.xsd 2009-05-28 22:25:33.000000000 +0200 > +++ mzML1.1.0clean.xsd 2009-05-28 22:31:05.000000000 +0200 > @@ -1029,7 +1029,7 @@ > This is a reference to a source file in sourceFileList. It ensures that an id is present in the file and is one of the values defined in KEY_SOURCEFILE_ID. > </xs:documentation> > </xs:annotation> > - <xs:selector xpath=".//dx:precursor |.//dx:scan" /> > + <xs:selector xpath=".//dx:precursor|.//dx:scan" /> > <xs:field xpath="@sourceFileRef" /> > </xs:keyref> > <xs:keyref name="KEYREF_RUN_SAMPLEREF" refer="dx:KEY_SAMPLE_ID"> > @@ -1056,7 +1056,7 @@ > This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID. > </xs:documentation> > </xs:annotation> > - <xs:selector xpath="./dx:run/dx:spectrumList |./dx:run/dx:chromatogramList" /> > + <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" /> > <xs:field xpath="@defaultDataProcessingRef" /> > </xs:keyref> > <xs:keyref name="KEYREF_DPREF" refer="dx:KEY_DP_ID"> > @@ -1065,7 +1065,7 @@ > This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID. > </xs:documentation> > </xs:annotation> > - <xs:selector xpath=".//dx:spectrum |.//dx:chromatogram |.//dx:binaryDataArray" /> > + <xs:selector xpath=".//dx:spectrum|.//dx:chromatogram|.//dx:binaryDataArray" /> > <xs:field xpath="@dataProcessingRef" /> > </xs:keyref> > <xs:keyref name="KEYREF_CVREF" refer="dx:KEY_CV_ID"> > @@ -1083,7 +1083,7 @@ > This is a reference to the CV in cvList used for unit terms. It ensures that an id is present in the file and is one of the values defined in KEY_CV_ID. > </xs:documentation> > </xs:annotation> > - <xs:selector xpath=".//dx:cvParam |.//dx:userParam" /> > + <xs:selector xpath=".//dx:cvParam|.//dx:userParam" /> > <xs:field xpath="@unitCvRef" /> > </xs:keyref> > <xs:keyref name="KEYREF_RPGREF" refer="dx:KEY_RPG_ID"> > @@ -1101,7 +1101,7 @@ > This is a reference to an instrument configuration in instrumentConfigurationList. It ensures that an id is present in the file and is one of the values defined in KEY_IC_ID. > </xs:documentation> > </xs:annotation> > - <xs:selector xpath="./dx:run/dx:spectrumList |./dx:run/dx:chromatogramList" /> > + <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" /> > <xs:field xpath="@defaultInstrumentConfigurationRef" /> > </xs:keyref> > <xs:keyref name="KEYREF_ICREF" refer="dx:KEY_IC_ID"> > > ------------------------------------------------------------------------------ > Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT > is a gathering of tech-side developers & brand creativity professionals. Meet > the minds behind Google Creative Lab, Visual Complexity, Processing, & > iPhoneDevCamp as they present alongside digital heavyweights like Barbarian > Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com > _______________________________________________ Psidev-ms-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev |
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From: Eric D. <ede...@sy...> - 2009-06-04 01:19:56
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Hi Steffen, yes, this fix has now been committed. Please let us know if this does not fix your problem. Thanks, Eric > -----Original Message----- > From: Steffen Neumann [mailto:sne...@ip...] > Sent: Wednesday, June 03, 2009 10:44 AM > To: Mass spectrometry standard development > Subject: Re: [Psidev-ms-dev] Problem parsing mzML.xsd RC6, with patch > > Hi, > > Has this been fixed ? > > Yours, > Steffen > > On Thu, 2009-05-28 at 22:32 +0200, Steffen Neumann wrote: > > Hi, > > > > I tried to create an Eclipse EMF model > > from the mzML RC6 XSD. > > > > I haven't found out how to cut&paste the full error, > > therefor these two screenshots :-( > > > > The problem are extra spaces " " in the xpath expressions: > > > > <xs:selector xpath=".//dx:precursor |.//dx:scan" /> > > ^^ > > below is a patch which cleans those up. > > > > Yours, > > Steffen > > > > > > > > --- mzML1.1.0.xsd 2009-05-28 22:25:33.000000000 +0200 > > +++ mzML1.1.0clean.xsd 2009-05-28 22:31:05.000000000 +0200 > > @@ -1029,7 +1029,7 @@ > > This is a reference to a source file in sourceFileList. It > ensures that an id is present in the file and is one of the values defined > in KEY_SOURCEFILE_ID. > > </xs:documentation> > > </xs:annotation> > > - <xs:selector xpath=".//dx:precursor |.//dx:scan" /> > > + <xs:selector xpath=".//dx:precursor|.//dx:scan" /> > > <xs:field xpath="@sourceFileRef" /> > > </xs:keyref> > > <xs:keyref name="KEYREF_RUN_SAMPLEREF" refer="dx:KEY_SAMPLE_ID"> > > @@ -1056,7 +1056,7 @@ > > This is a reference to a data processing element in > dataProcessingList. It ensures that an id is present in the file and is > one of the values defined in KEY_DP_ID. > > </xs:documentation> > > </xs:annotation> > > - <xs:selector xpath="./dx:run/dx:spectrumList > |./dx:run/dx:chromatogramList" /> > > + <xs:selector > xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" /> > > <xs:field xpath="@defaultDataProcessingRef" /> > > </xs:keyref> > > <xs:keyref name="KEYREF_DPREF" refer="dx:KEY_DP_ID"> > > @@ -1065,7 +1065,7 @@ > > This is a reference to a data processing element in > dataProcessingList. It ensures that an id is present in the file and is > one of the values defined in KEY_DP_ID. > > </xs:documentation> > > </xs:annotation> > > - <xs:selector xpath=".//dx:spectrum |.//dx:chromatogram > |.//dx:binaryDataArray" /> > > + <xs:selector > xpath=".//dx:spectrum|.//dx:chromatogram|.//dx:binaryDataArray" /> > > <xs:field xpath="@dataProcessingRef" /> > > </xs:keyref> > > <xs:keyref name="KEYREF_CVREF" refer="dx:KEY_CV_ID"> > > @@ -1083,7 +1083,7 @@ > > This is a reference to the CV in cvList used for unit terms. > It ensures that an id is present in the file and is one of the values > defined in KEY_CV_ID. > > </xs:documentation> > > </xs:annotation> > > - <xs:selector xpath=".//dx:cvParam |.//dx:userParam" /> > > + <xs:selector xpath=".//dx:cvParam|.//dx:userParam" /> > > <xs:field xpath="@unitCvRef" /> > > </xs:keyref> > > <xs:keyref name="KEYREF_RPGREF" refer="dx:KEY_RPG_ID"> > > @@ -1101,7 +1101,7 @@ > > This is a reference to an instrument configuration in > instrumentConfigurationList. It ensures that an id is present in the file > and is one of the values defined in KEY_IC_ID. > > </xs:documentation> > > </xs:annotation> > > - <xs:selector xpath="./dx:run/dx:spectrumList > |./dx:run/dx:chromatogramList" /> > > + <xs:selector > xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" /> > > <xs:field xpath="@defaultInstrumentConfigurationRef" /> > > </xs:keyref> > > <xs:keyref name="KEYREF_ICREF" refer="dx:KEY_IC_ID"> > > > > ------------------------------------------------------------------------ > ------ > > Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT > > is a gathering of tech-side developers & brand creativity professionals. > Meet > > the minds behind Google Creative Lab, Visual Complexity, Processing, & > > iPhoneDevCamp as they present alongside digital heavyweights like > Barbarian > > Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com > > _______________________________________________ Psidev-ms-dev mailing > list Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > > -------------------------------------------------------------------------- > ---- > OpenSolaris 2009.06 is a cutting edge operating system for enterprises > looking to deploy the next generation of Solaris that includes the latest > innovations from Sun and the OpenSource community. Download a copy and > enjoy capabilities such as Networking, Storage and Virtualization. > Go to: http://p.sf.net/sfu/opensolaris-get > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev |
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