From: Steffen N. <sne...@IP...> - 2006-03-02 14:55:17
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Hi, We successfully obtained an mzData Converter from Applied=20 for our Qstar LC QTOF, and now we're looking for pointers/Contacts=20 to MzData Converters for any one of the following machines: - Bruker Reflex III (MALDI) running FlexControl 1.2 - Bruker Apex III 70e (FTICR) - Agilent 5975 inert MS=20 - Thermo Finnigan TSQ Quantum Ultra AM LC-MS with XCalibur software Thanks in advance Yours, Steffen |
From: Cannataro_Mario <can...@un...> - 2006-03-02 16:57:55
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Dear Steffen in our proteomics laboratory we have two mass spectrometry instruments: a) Applied Biosystems Voyager DE-STR MALDI-TOF, interfaced with BioExplo= rer software b) Applied Biosystems Hybrid QSTAR XL LC-MS/MS QTOF interfaced to Analys= t QS software. Is the software you mentioned able to convert the binary dataset files sa= ved by such instruments in the mzData format? In this case, is it able to collect all experiment information or do you = need to fill by hand some missing field? We are developing a specialized spectra database and we also are interest= ed in mzData converters Thank you in advance Mario Cannataro -- Prof. Mario Cannataro Informatics and Biomedical Engineering,Faculty of Medicine, University "Magna Gr=E6cia" of Catanzaro, Via T. Campanella, 115 88100 CATANZARO, ITALY Tel: 0961-369 4100 Fax: 0961-369 4070 Email: can...@un... Quoting Steffen Neumann <sne...@IP...>: > Hi, > > We successfully obtained an mzData Converter from Applied > for our Qstar LC QTOF, and now we're looking for pointers/Contacts > to MzData Converters for any one of the following machines: > > - Bruker Reflex III (MALDI) running FlexControl 1.2 > - Bruker Apex III 70e (FTICR) > - Agilent 5975 inert MS > - Thermo Finnigan TSQ Quantum Ultra AM > LC-MS with XCalibur software > > Thanks in advance > > Yours, > Steffen > > ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. |
From: Cannataro_Mario <can...@un...> - 2006-03-02 16:57:59
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Dear Steffen in our proteomics laboratory we have two mass spectrometry instruments: a) Applied Biosystems Voyager DE-STR MALDI-TOF, interfaced with BioExplo= rer software b) Applied Biosystems Hybrid QSTAR XL LC-MS/MS QTOF interfaced to Analys= t QS software. Is the software you mentioned able to convert the binary dataset files sa= ved by such instruments in the mzData format? In this case, is it able to collect all experiment information or do you = need to fill by hand some missing field? We are developing a specialized spectra database and we also are interest= ed in mzData converters Thank you in advance Mario Cannataro -- Prof. Mario Cannataro Informatics and Biomedical Engineering,Faculty of Medicine, University "Magna Gr=E6cia" of Catanzaro, Via T. Campanella, 115 88100 CATANZARO, ITALY Tel: 0961-369 4100 Fax: 0961-369 4070 Email: can...@un... Quoting Steffen Neumann <sne...@IP...>: > Hi, > > We successfully obtained an mzData Converter from Applied > for our Qstar LC QTOF, and now we're looking for pointers/Contacts > to MzData Converters for any one of the following machines: > > - Bruker Reflex III (MALDI) running FlexControl 1.2 > - Bruker Apex III 70e (FTICR) > - Agilent 5975 inert MS > - Thermo Finnigan TSQ Quantum Ultra AM > LC-MS with XCalibur software > > Thanks in advance > > Yours, > Steffen > > ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. |
From: Steffen N. <sne...@IP...> - 2006-03-03 07:31:19
Attachments:
test.mzdata
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On Thu, 2006-03-02 at 17:45 +0100, Cannataro_Mario wrote: > Dear Steffen > in our proteomics laboratory we have two mass spectrometry instruments: [...] > In this case, is it able to collect all experiment information or do you need > to fill by hand some missing field? You can add some fields (such as experiment, person, organization manually in the converter. I have attached a (pruned) testfile if you want to look at the other fields in <instrument>. We have an mzData Editor based on Eclipse EMF available, which can edit & validate mzData files. We can create command line tools for batch-modifying mzData files: http://www.ipb-halle.de/english/stress-and-developm-biolology/research/bioinformatics/research-projects/metabolomics-platform/ > We are developing a specialized spectra database Our database is up and running, we have a web upload, and http://metlin.scripps.edu/download/ can read mzData. Yours, Steffen |