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psidev-ms-cvs
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From: Eric D. <ede...@us...> - 2009-05-06 05:45:12
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Date: Wednesday May 6, 2009 @ 5:45 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8527 Modified Files: lastID.txt psi-ms.obo Log Message: Major merge of MS CV with PI CV and imzML CV. Now version 2.0.0 |
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From: Eric D. <ede...@us...> - 2009-05-07 07:23:06
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Date: Thursday May 7, 2009 @ 7:23 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv4575 Modified Files: psi-ms.obo Log Message: Added 3 Thermo LTQ models |
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From: Marc S. <mar...@us...> - 2009-05-13 07:20:04
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Date: Wednesday May 13, 2009 @ 7:19 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1223/controlledVocabulary Modified Files: psi-ms.obo Log Message: Added fraction identifier terms |
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From: Andreas B. <and...@us...> - 2009-05-18 11:51:12
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Date: Monday May 18, 2009 @ 11:51 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10676 Modified Files: lastID.txt psi-ms.obo Log Message: major changes in PI part: see minutes pi-telcon May, 14th, some issues remain unsolved of the 2009-05-07 telcon |
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From: Andreas B. <and...@us...> - 2009-05-18 22:32:19
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Date: Monday May 18, 2009 @ 22:32 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv23235 Modified Files: psi-ms.obo Log Message: obsoleted terms MS:1001061 (neutral loss) and MS:1001416 (spectrum titel), replaced by their MS pedents MS:1000336 and MS:1000796, respectively. |
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From: Fredrik L. <fle...@us...> - 2009-05-19 07:10:34
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Date: Tuesday May 19, 2009 @ 7:10 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32414 Modified Files: psi-ms.obo Log Message: Obsoleted MGF SCANS and MGF RAWSCANS |
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From: Fredrik L. <fle...@us...> - 2009-05-19 07:26:58
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Date: Tuesday May 19, 2009 @ 7:26 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1788 Modified Files: psi-ms.obo Log Message: Changed MS1 description and spelling of unknown |
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From: Eric D. <ede...@us...> - 2009-05-19 17:45:45
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Date: Tuesday May 19, 2009 @ 17:45 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19048 Modified Files: psi-ms.obo Log Message: Added large number of terms for TraML |
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From: Andreas B. <and...@us...> - 2009-05-22 15:10:03
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Date: Friday May 22, 2009 @ 15:09 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19828 Modified Files: psi-ms.obo lastID.txt Log Message: added taxonomy terms (fixed issue 50); moved role type to contact person attribute; moved unknown modification under newly created peptide modification details |
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From: Andreas B. <and...@us...> - 2009-05-22 15:47:55
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Date: Friday May 22, 2009 @ 15:47 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24451 Modified Files: psi-ms.obo Log Message: readded term 1001213, whcih somehow got lost; obsoleted it and sent to purgatory |
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From: Marc S. <mar...@us...> - 2009-05-26 11:36:27
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Date: Tuesday May 26, 2009 @ 11:34 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8605/controlledVocabulary Modified Files: psi-ms.obo Log Message: fixed wrong parent term names |
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From: Matt C. <ch...@us...> - 2009-05-27 18:08:26
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Date: Wednesday May 27, 2009 @ 18:07 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv2128/psi-ms/mzML/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: - added chromatogram types for SIM, SRM, and CRM (the last one is obsolete by design) - fixed space at the end of an id - fixed weird import in the obo header |
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From: Andreas B. <and...@us...> - 2009-05-28 12:40:02
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Date: Thursday May 28, 2009 @ 12:39 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8151 Modified Files: psi-ms.obo Log Message: fixed wrong length unit descriptor in has_units relationship |
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From: Andreas B. <and...@us...> - 2009-06-11 03:47:01
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Date: Thursday June 11, 2009 @ 3:46 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv2087 Modified Files: lastID.txt psi-ms.obo Log Message: added terms for xtandem OMSSA and SpectraST |
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From: Andreas B. <and...@us...> - 2009-06-11 04:23:45
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Date: Thursday June 11, 2009 @ 4:22 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5137 Modified Files: lastID.txt psi-ms.obo Log Message: added terms Mascot Parser |
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From: Matt C. <ch...@us...> - 2009-06-11 15:25:37
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Date: Thursday June 11, 2009 @ 15:25 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12410/psi-ms/mzML/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: - fixed duplicate accession from previous commit - added key-value relationships to specify which binary data types are valid for which binary data arrays - improved definitions for binary data types - added new binary data type for null-terminated ASCII strings |
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From: Eric D. <ede...@us...> - 2009-06-11 19:34:53
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Date: Thursday June 11, 2009 @ 19:34 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10901 Modified Files: lastID.txt psi-ms.obo Log Message: added terms: name: AB SCIEX TOF/TOF nativeID format name: AB SCIEX TOF/TOF database name: AB SCIEX TOF/TOF 5800 |
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From: Marc S. <mar...@us...> - 2009-06-12 09:02:19
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Date: Friday June 12, 2009 @ 9:00 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10790/controlledVocabulary Modified Files: psi-ms.obo Log Message: Fixed wrong parent term name |
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From: Eric D. <ede...@us...> - 2009-06-12 17:32:49
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Date: Friday June 12, 2009 @ 17:31 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12885 Modified Files: lastID.txt psi-ms.obo Log Message: Added AB SCIEX TOF/TOF Series Explorer Software term |
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From: Marc S. <mar...@us...> - 2009-06-13 07:55:21
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Date: Saturday June 13, 2009 @ 7:55 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27232/controlledVocabulary Modified Files: psi-ms.obo Log Message: Added new data processing terms |
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From: Eric D. <ede...@us...> - 2009-06-16 19:59:39
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Date: Tuesday June 16, 2009 @ 19:59 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv2723 Modified Files: psi-ms.obo Log Message: fixed version number only |
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From: Andreas B. <and...@us...> - 2009-06-16 20:11:27
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Date: Tuesday June 16, 2009 @ 20:11 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5254 Modified Files: psi-ms.obo lastID.txt Log Message: added terms and fixed parse error when loading with OBOEdit |
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From: Andreas B. <and...@us...> - 2009-06-17 08:02:43
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Date: Wednesday June 17, 2009 @ 8:02 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21406 Modified Files: psi-ms.obo Log Message: ProteinScape is now analysis software |
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From: Andreas B. <and...@us...> - 2009-06-17 08:05:51
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Date: Wednesday June 17, 2009 @ 8:05 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22206 Modified Files: psi-ms.obo Log Message: added double values to FDR and OMSSA e-value thresholds |
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From: Andreas B. <and...@us...> - 2009-06-19 19:52:31
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Date: Friday June 19, 2009 @ 19:52 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5954 Modified Files: psi-ms.obo Log Message: added double value types to a number of terms |
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