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From: Puneet S. <ps...@us...> - 2007-06-27 16:50:38
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Date: Wednesday June 27, 2007 @ 9:50 Author: psouda http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5133/schema Log Message: Directory /cvsroot/psidev/psi/psi-ms/mzML/schema added to the repository |
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From: Puneet S. <ps...@us...> - 2007-06-27 17:01:45
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Date: Wednesday June 27, 2007 @ 10:01 Author: psouda http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9449 Added Files: mzML0.93.xsd Log Message: Revised mzML XML schema. Complex structures have been revised and simplified, specific use cases have been revised and verified, cardinality and level of requirement have been specified for both elements and attributes. |
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From: Lennart M. <mar...@us...> - 2007-07-03 09:17:47
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Date: Tuesday July 3, 2007 @ 2:17 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16259 Modified Files: mzML0.93.xsd Log Message: Updated three things: i) Fixed 'Contact' type to become 'ContactType' (also updated relevant element) ii) Fixed 'CV' type to become 'CVType' (also updated relevant element) iii) Changed the 'substitutionGroup' for 'ComponentType' ('source', 'analyzer', 'detector') in the schema to a 'choice'. This means that 'ComponentType' is no longer abstract, and that there are no more top-level elements apart from the 'mzML' root tag left in the schema. All three currently existing instance documents still validate against the schema; this is only an esthetic operation on the schema itself. |
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From: Eric D. <ede...@us...> - 2007-07-25 06:27:30
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Date: Tuesday July 24, 2007 @ 23:27 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13221 Added Files: mzML0.93_idx.xsd Log Message: added index schema |
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From: Eric D. <ede...@us...> - 2007-07-26 08:02:25
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Date: Thursday July 26, 2007 @ 1:02 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv22130 Modified Files: mzML0.93.xsd Log Message: Changed datatype from xs:anyURI to xs:string for: paramGroup id= sample id= instrument id= software id= processingMethod id= run id= and instrumentRef= spectrum id= scan instrumentRef= binaryDataArray dataProcessingRef= Although XMLSpy was apparently happy to have arbitrary numbers or strings for anyURI, Xerces was not. Stil can be a URI but is not enforced. |
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From: Eric D. <ede...@us...> - 2007-07-26 08:06:55
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Date: Thursday July 26, 2007 @ 1:06 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23675 Modified Files: mzML0.93_idx.xsd Log Message: Changed datatype of fileChecksum from "FileChecksum" to "xs:string" |
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From: Eric D. <ede...@us...> - 2007-10-02 00:04:48
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Date: Monday October 1, 2007 @ 17:04 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2787 Added Files: mzML0.99.0.xsd mzML0.99.0_idx.xsd Log Message: latest presubmission version |
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From: Eric D. <ede...@us...> - 2007-11-12 08:28:36
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Date: Monday November 12, 2007 @ 0:28 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv24096 Added Files: mzML0.99.1.xsd mzML0.99.1_idx.xsd Log Message: Added rev 0.99.1 schemas |
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From: Eric D. <ede...@us...> - 2007-11-12 08:35:56
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Date: Monday November 12, 2007 @ 0:35 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26807 Added Files: ms-mapping.xml Log Message: add cvParam mapping schema |
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From: Lennart M. <mar...@us...> - 2007-12-04 11:33:58
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Date: Tuesday December 4, 2007 @ 3:34 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv17496 Modified Files: ms-mapping.xml Log Message: Updated the ms-mapping file according to the suggestions by Fredrik Levander: - The spectrum combination param was moved from 'acquisition' to its parent 'acquisitionList'. - A scan attribute was added to 'acquisition' as 'MAY'. |
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From: Lennart M. <mar...@us...> - 2008-04-25 16:09:01
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Date: Friday April 25, 2008 @ 9:08 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21815/schema Added Files: mzML0.99.9.xsd mzML0.99.9_idx.xsd Log Message: Commit of version 0.99.9 and two example files. |
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From: Lennart M. <mar...@us...> - 2008-04-25 16:18:59
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Date: Friday April 25, 2008 @ 9:18 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv25618 Modified Files: mzML0.99.9_idx.xsd Log Message: Updated documentation of two elements. |
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From: Lennart M. <mar...@us...> - 2008-04-30 14:38:42
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Date: Wednesday April 30, 2008 @ 7:38 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28797/schema Added Files: mzML0.99.10.xsd mzML0.99.10_idx.xsd Log Message: Added updated schemata as well as revised instance documents. New version is 0.99.10. Change log: - SourceFileListRef in acquisitionSettings + Introduced sourceFileRefs instead of the list of sourceFiles - Recursive referenceableParamGroup + Removed recursiveness - UserParam + added optional unit and unitaccession + type should be used for 'datatype' -- added documentation to indicate this. + type and value are now optional - Updated some schema documentation |
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From: chambm <ch...@us...> - 2008-05-08 17:00:12
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Date: Thursday May 8, 2008 @ 10:00 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28205 Added Files: mzML0.99.11.xsd mzML0.99.11_idx.xsd Log Message: - changed RunType::instrumentConfigurationRef to defaultInstrumentConfigurationRef\n- changed MzMLType::id to optional and added LSID recommendation\n- added externalSpectrumID and externalNativeID to AcquisitionType with appropriate documentation |
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From: chambm <ch...@us...> - 2008-05-22 15:35:02
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Date: Thursday May 22, 2008 @ 8:35 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9675/psi-ms/mzML/schema Added Files: mzML0.99.12.xsd mzML0.99.12_idx.xsd Log Message: - added unitCvRef to cvParam and userParam - added sourceFileRef, externalNativeID, and externalSpectrumID to PrecursorType |
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From: Lennart M. <mar...@us...> - 2008-07-22 16:08:05
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Date: Tuesday July 22, 2008 @ 9:08 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21614 Removed Files: ms-mapping.xml Log Message: Removed old mapping file from CVS. The correct place to locate this file is in the PSIDEV SVN repository for the mzML validator, which is here http://psidev.svn.sourceforge.net/svnroot/psidev/psi/mzml/validator. |
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From: Marc S. <mar...@us...> - 2008-11-14 13:24:55
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Date: Friday November 14, 2008 @ 13:24 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21781 Modified Files: mzML1.0.0.xsd Log Message: Documentation improvements |
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From: Marc S. <mar...@us...> - 2008-11-18 07:33:41
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Date: Tuesday November 18, 2008 @ 7:33 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7328 Added Files: mzML_dev.xsd mzML_dev_idx.xsd Log Message: Added current development version of schema |
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From: chambm <ch...@us...> - 2008-11-25 18:59:55
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Date: Tuesday November 25, 2008 @ 18:59 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28255/psi-ms/mzML/schema Modified Files: mzML_dev.xsd Log Message: - ScanWindowListType moved to AcquisitionType and made optional - ScanType deleted - optional defaultDataProcessingRef added to SpectrumList and ChromatogramList - SpectrumList loses ParamType inheritance - softwareRef moved from DataProcessingType to ProcessingMethodType - SoftwareParamType version attribute moved to SoftwareType - SoftwareParamType deleted - fixed some documentation (dpRefs and icRefs are always optional since DP and IC are themselves optional) |
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From: chambm <ch...@us...> - 2008-11-26 15:20:43
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Date: Wednesday November 26, 2008 @ 15:20 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13748/psi-ms/mzML/schema Modified Files: mzML_dev.xsd Log Message: - softwareRef moved from DataProcessingType to ProcessingMethodType (for real this time) |
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From: chambm <ch...@us...> - 2008-11-26 15:33:21
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Date: Wednesday November 26, 2008 @ 15:33 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14262/psi-ms/mzML/schema Modified Files: mzML_dev.xsd Log Message: - changed defaultDataProcessingRefs on SpectrumList and ChromatogramList to required due to minimum data processing requirement of "conversion to mzML" |
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From: chambm <ch...@us...> - 2008-12-09 18:02:10
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Date: Tuesday December 9, 2008 @ 18:02 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27012/psi-ms/mzML/schema Modified Files: mzML_dev.xsd Log Message: - made changes as discussed in 20081209 PSI-MS conference call |
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From: chambm <ch...@us...> - 2008-12-15 23:01:53
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Date: Monday December 15, 2008 @ 23:01 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1722/psi-ms/mzML/schema Modified Files: mzML_dev.xsd mzML_dev_idx.xsd Log Message: - restored externalSpectrumID attribute and made spectrumRef optional again - added key/keyref constraints for every element's id and id references... at least, I think I did; my brain was melting toward the end - added Angel's key/keyref constraints to index (I'm not sure it's quite right yet since I had trouble getting it to validate) - fixed some typos and improved annotations |
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From: Matt C. <ch...@us...> - 2008-12-22 16:31:36
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Date: Monday December 22, 2008 @ 16:31 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8340/psi-ms/mzML/schema Modified Files: mzML_dev.xsd Log Message: - removed ScanType number attribute - refactored ComponentList to be 1 or more sources, 1 or more analyzers, and 1 or more detectors (in that order) |
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From: Matt C. <ch...@us...> - 2009-01-06 16:50:25
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Date: Tuesday January 6, 2009 @ 16:50 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12142/psi-ms/mzML/schema Added Files: mzML1.1.0.xsd mzML1.1.0_idx.xsd Log Message: - incorporated Fredrik's schema changes for product and neutralLoss tracking - added scanTime attribute to index (optionally used for spectra) - moved mzML_dev to mzML1.1.0 |
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