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psidev-ms-cvs
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From: Matt C. <ch...@us...> - 2009-02-04 18:05:35
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Date: Wednesday February 4, 2009 @ 18:05 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19203/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - updated release date and creator (third time's the charm) |
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From: Marc S. <mar...@us...> - 2009-02-05 08:41:00
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Date: Thursday February 5, 2009 @ 8:40 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21713 Modified Files: psi-ms.obo Log Message: Updated units as decided on the last call |
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From: Fredrik L. <fle...@us...> - 2009-02-06 10:14:12
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Date: Friday February 6, 2009 @ 10:14 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5279 Modified Files: psi-ms.obo Log Message: Added term for scan analyzer offset |
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From: Marc S. <mar...@us...> - 2009-02-06 15:15:41
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Date: Friday February 6, 2009 @ 15:15 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv4617 Modified Files: psi-ms.obo Log Message: updated spectrum representation term names |
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From: Marc S. <mar...@us...> - 2009-02-09 11:01:36
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Date: Monday February 9, 2009 @ 11:01 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21422/controlledVocabulary Modified Files: psi-ms.obo Log Message: Renamed some terms because of 'm/z' in term name (as decided on the list) |
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From: Matt C. <ch...@us...> - 2009-02-10 22:51:10
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Date: Tuesday February 10, 2009 @ 22:51 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16187/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed a few obsolete terms - replaced PDA spectrum with absorption spectrum - added EMR spectrum and emission spectrum |
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From: Matt C. <ch...@us...> - 2009-02-10 22:52:04
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Date: Tuesday February 10, 2009 @ 22:52 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16856/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - bumped version |
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From: Marc S. <mar...@us...> - 2009-02-12 10:57:30
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Date: Thursday February 12, 2009 @ 10:57 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28669/controlledVocabulary Modified Files: psi-ms.obo Log Message: Unit and type changes discussed at the last conference call |
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From: Marc S. <mar...@us...> - 2009-02-13 09:50:33
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Date: Friday February 13, 2009 @ 9:50 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17808/controlledVocabulary Modified Files: psi-ms.obo Log Message: added chromatogram terms |
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From: Marc S. <mar...@us...> - 2009-02-18 08:22:02
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Date: Wednesday February 18, 2009 @ 8:21 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7304/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: Updated CV: added intensity unit 'counts per second', made lowest/highest wavelength value a 'chromatogram attribute', fixed minor formatting errors |
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From: Matt C. <ch...@us...> - 2009-02-24 23:17:05
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Date: Tuesday February 24, 2009 @ 22:28 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11226/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - added Steffan's terms |
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From: Matt C. <ch...@us...> - 2009-02-26 17:10:49
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Date: Thursday February 26, 2009 @ 17:10 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11654/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - added diagnostic LC array types - added Bruker U2 nativeID format |
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From: Matt C. <ch...@us...> - 2009-03-04 16:17:29
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Date: Wednesday March 4, 2009 @ 16:17 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12621/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed lowest/highest wavelength term names and definitions to be consistent with the analogous m/z terms |
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From: Matt C. <ch...@us...> - 2009-03-04 16:18:22
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Date: Wednesday March 4, 2009 @ 16:18 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12708/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - updated version and date |
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From: Eric D. <ede...@us...> - 2009-03-06 23:41:07
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Date: Friday March 6, 2009 @ 23:40 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25977 Modified Files: lastID.txt psi-ms.obo Log Message: added MS:1000824 "no nativeID format" |
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From: Matt C. <ch...@us...> - 2009-03-09 21:33:26
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Date: Monday March 9, 2009 @ 21:33 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv4950/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed some consistency issues with source file format names and definitions - renamed Waters RAW format to Waters DAT file format since we decided to point sourceFile elements at files only - added term for Bruker FID file format |
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From: Matt C. <ch...@us...> - 2009-03-09 21:37:05
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Date: Monday March 9, 2009 @ 21:36 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5233/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed malformed def line |
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From: Marc S. <mar...@us...> - 2009-03-10 13:58:58
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Date: Tuesday March 10, 2009 @ 13:58 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv23007/controlledVocabulary Modified Files: psi-ms.obo Log Message: added unit for electrical field strength |
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From: Marc S. <mar...@us...> - 2009-03-17 07:47:18
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Date: Tuesday March 17, 2009 @ 7:47 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv20718/controlledVocabulary Modified Files: psi-ms.obo Log Message: Fixed a wrong parent relation |
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From: Marc S. <mar...@us...> - 2009-03-18 08:32:38
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Date: Wednesday March 18, 2009 @ 8:32 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30925 Modified Files: psi-ms.obo Log Message: Changes from the last call: renamed scan time; added elution time; obsoleted base64 integer encodings |
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From: Eric D. <ede...@us...> - 2009-03-24 16:56:26
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Date: Tuesday March 24, 2009 @ 16:56 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27616 Modified Files: psi-ms.obo Log Message: updated unit ontology rev to 1.20 Added terms isolation window target m/z, isolation window lower offset, isolation window upper offset Oboleted terms isolation window upper limit, isolation window lower limit |
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From: Eric D. <ede...@us...> - 2009-03-24 16:57:02
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Date: Tuesday March 24, 2009 @ 16:56 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27796 Modified Files: lastID.txt Log Message: updated to last used ID |
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From: Eric D. <ede...@us...> - 2009-03-24 17:07:29
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Date: Tuesday March 24, 2009 @ 17:07 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28891 Modified Files: psi-ms.obo Log Message: Put dwell time under scan attribute |
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From: Fredrik L. <fle...@us...> - 2009-03-25 11:30:40
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Date: Wednesday March 25, 2009 @ 11:30 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29138 Modified Files: psi-ms.obo Log Message: Updated Waters raw file name and definition. |
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From: Eric D. <ede...@us...> - 2009-03-26 06:34:43
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Date: Thursday March 26, 2009 @ 6:34 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10054 Modified Files: psi-ms.obo Log Message: added units for intensity array |
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