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psidev-ms-cvs
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From: Kai R. <kr...@us...> - 2003-09-12 15:42:20
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Date: Friday September 12, 2003 @ 8:42 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv14483/xml Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml added to the repository |
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From: Kai R. <kr...@us...> - 2003-09-12 15:49:17
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Date: Friday September 12, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv15350/xml Added Files: MzDataWriter.java Log Message: First version of an XML marshaller without dependency on Castor. It's not thoroughly tested yet! All compulsory data is written correctly, that is MSV is not complaining. |
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From: Kai R. <kr...@us...> - 2003-09-12 16:04:56
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Date: Friday September 12, 2003 @ 9:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv21274 Modified Files: MzDataWriter.java Log Message: A bit of cleanup |
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From: Kai R. <kr...@us...> - 2003-09-15 12:42:41
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Date: Monday September 15, 2003 @ 5:42 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv16151 Modified Files: MzDataWriter.java Log Message: Corrected the output of Date elements to XML format xs:dateTime Added an internal class OutputType The m/z and intensity array output is now defined by the setting of the OutputType value in this class. The Binary classes are no longer necessary. |
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From: Kai R. <kr...@us...> - 2003-10-20 12:02:10
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Date: Monday October 20, 2003 @ 3:03 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv29970/src/java/org/psi/ms/xml Modified Files: MzDataWriter.java Log Message: Adapted the converter output to the following schema changes: Changed the type of M/Z range from int to float (line 484) Renamed "instrument" to "acqInst" (line 577) Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense) Changed acqID from required to optional (line 633) |
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From: Kai R. <kr...@us...> - 2003-11-14 16:49:32
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Date: Friday November 14, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv23169/java/org/psi/ms/xml Modified Files: MzDataWriter.java Log Message: Re-arranged the model so that it reflects the changes to the XML schema. Implemented the ImporterI interface with the DtaSetImporter. |
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From: Kai R. <kr...@us...> - 2003-11-28 15:53:56
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Date: Friday November 28, 2003 @ 7:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv6092 Modified Files: MzDataWriter.java Log Message: Adapted to new processing procedure: removed marshall(MzData) remove marshall(AcquisitionList) made marshall(Acquistion) public added initialize(MzData, acquisitionCount) and finish() |
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From: Kai R. <kr...@us...> - 2003-12-03 17:41:27
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Date: Wednesday December 3, 2003 @ 9:41 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv13663/xml Modified Files: MzDataWriter.java Log Message: Implements now the ExporterI interface as first step into having several output possibilities (e.g. XML _and_ DB). |
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From: Kai R. <kr...@us...> - 2003-12-05 16:02:54
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Date: Friday December 5, 2003 @ 8:02 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv8298 Modified Files: MzDataWriter.java Log Message: Made the Writer more robust: now it doesn't fail miserably with a NullPointerException, but complains properly which element/attribute is missing. |
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From: Kai R. <kr...@us...> - 2004-01-14 15:57:43
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Date: Wednesday January 14, 2004 @ 7:57 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv28588/src/java/org/psi/ms/xml Modified Files: MzDataWriter.java Log Message: Changed from krunte to Kai Runte. |
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From: Kai R. <kr...@us...> - 2004-10-20 11:47:44
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Date: Wednesday October 20, 2004 @ 4:47 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2334/src/java/org/psi/ms/xml Modified Files: MzDataWriter.java Log Message: The base64 de/encoder supports now endianess. Also added a test with specific values. |
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