psidev-ms-cvs

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Monday September 15, 2003 @ 6:44
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv30243

Modified Files:
	Acquisition.java Supplement.java 
Removed Files:
	DataArrayBinary.java IntenArrayBinary.java MzArrayBinary.java 
	MzArrayBinaryType.java 
Log Message:
Removed all *Binary classes. These classes are obsolete as an object
model should not depend on the desired output. That is the task of
the MzDataWriter class.

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Monday October 20, 2003 @ 3:03
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv29970/src/java/org/psi/ms/model

Modified Files:
	AcqTime.java CvCoreParamType.java CvUserParamType.java 
	MzRange.java 
Log Message:
Adapted the converter output to the following schema changes:
Changed the type of M/Z range from int to float (line 484)
Renamed "instrument" to "acqInst" (line 577)
Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense)
Changed acqID from required to optional (line 633)

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Monday November 10, 2003 @ 2:21
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv15448/java/org/psi/ms/model

Modified Files:
	Desc.java 
Log Message:
Renamed:
ConverterI -> ImporterI
DtaSetConverter -> DtaSetImporter

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Friday November 14, 2003 @ 8:49
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv23169/java/org/psi/ms/model

Modified Files:
	AcqDesc.java Acquisition.java Admin.java Analyzer.java 
	Desc.java Detector.java InstrumentCommonSettings.java 
	MzData.java Person.java Precursor.java ProcessingMethod.java 
	Source.java Supplement.java Test.java 
Removed Files:
	AcqDescList.java Raw.java 
Log Message:
Re-arranged the model so that it reflects the changes to the XML schema.
Implemented the ImporterI interface with the DtaSetImporter.

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Friday November 28, 2003 @ 7:51
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv5840

Modified Files:
	Analyzer.java MzData.java ProcessingMethod.java 
Log Message:
Added more default values to avoid null pointer exceptions and cleaned up
the constructor of the MzData class.

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Thursday December 4, 2003 @ 10:20
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv3002/model

Modified Files:
	AcqDesc.java AcqSettings.java AcqSpecification.java 
	Acquisition.java InstrumentAcqSettings.java 
Log Message:
Returns less null pointers. Not entirely sure if that's a good thing...

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Friday December 5, 2003 @ 7:44
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv4872

Modified Files:
	AcqSettings.java AcqSpecification.java 
	InstrumentAcqSettings.java 
Log Message:
Reversed some of the changes as this data must be provided and there is
no default value. If the data is not provided, the MzDataWriter must
throw a decent error message.

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Lawrence B. <lb...@us...>]

Date:	Tuesday January 13, 2004 @ 7:14
Author:	lbower


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv29836/src/java/org/psi/ms/model

Modified Files:
	Test.java 
Log Message:
adding a new package containing wrapper classes for the mzData objects, used by the swing package as dataobjects, changes to Swing package to folow in later commit

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Wednesday January 14, 2004 @ 7:57
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1:/tmp/cvs-serv28588/src/java/org/psi/ms/model

Modified Files:
	AcqDesc.java AcqParam.java AcqSettings.java 
	AcqSpecification.java AcqTime.java AcqUserParam.java 
	Acquisition.java AcquisitionList.java Activation.java 
	Admin.java Analyzer.java CvCoreParamType.java 
	CvCoreParamTypeChoice.java CvUserParamType.java 
	CvUserParamTypeChoice.java Data.java DataArray.java 
	DataProcessing.java Desc.java Detector.java InstParam.java 
	InstUserParam.java InstrumentAcqSettings.java 
	InstrumentCommonSettings.java Ion.java List.java 
	MultiTypeValue.java MzData.java MzRange.java Person.java 
	Precursor.java PrecursorList.java ProcessingMethod.java 
	Range.java RawDataType.java Software.java Source.java 
	SourceFile.java Summary.java SupDesc.java SupDescList.java 
	SupParam.java SupUserParam.java Supplement.java 
	SupplementList.java TestParam.java TestUserParam.java 
Log Message:
Changed from krunte to Kai Runte.

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Tuesday January 27, 2004 @ 3:53
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18907

Removed Files:
	AcqDescList.java Raw.java 
Log Message:
No longer used.

[Psidev-ms-cvs] CVS update: psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

[Kai R. <kr...@us...>]

Date:	Monday October 11, 2004 @ 0:05
Author:	krunte


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model

Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2940/src/java/org/psi/ms/model

Modified Files:
	DataProcessing.java Desc.java 
Log Message:
Some code refactoring.