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psidev-ms-cvs
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From: Kai R. <kr...@us...> - 2003-08-11 17:20:14
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Date: Monday August 11, 2003 @ 10:17 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv8003/java/org/psi/ms/converter Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter added to the repository |
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From: Kai R. <kr...@us...> - 2003-08-11 17:30:47
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Date: Monday August 11, 2003 @ 10:22 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv8190/src/java/org/psi/ms/converter Added Files: DtaReader.java DtaSetConverter.java Log Message: Initial checkin. |
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From: Kai R. <kr...@us...> - 2003-08-11 18:00:14
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Date: Monday August 11, 2003 @ 10:59 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv14617/src/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Some tweaks to get it run with the new schema. |
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From: Kai R. <kr...@us...> - 2003-08-20 12:29:01
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Date: Wednesday August 20, 2003 @ 3:56 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv11828/converter Modified Files: DtaReader.java Log Message: Renamed the getters/setters of floats and ints from e.g. get_int to the proper getInt |
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From: Kai R. <kr...@us...> - 2003-08-20 17:18:31
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv5680/src/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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From: Kai R. <kr...@us...> - 2003-08-20 18:25:17
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Date: Wednesday August 20, 2003 @ 11:12 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv21157/java/org/psi/ms/converter Modified Files: DtaReader.java Log Message: Transferred all methods of AcqSettingsType to AcqSettings. |
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From: Kai R. <kr...@us...> - 2003-08-20 19:04:55
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Date: Wednesday August 20, 2003 @ 10:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv13015/java/org/psi/ms/converter Modified Files: DtaReader.java Log Message: Replaced the class AcqSettingsTypeSpecTypeType by the internal class AcqSettingsType.SpecType |
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From: Kai R. <kr...@us...> - 2003-08-21 16:12:37
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Date: Thursday August 21, 2003 @ 3:58 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv8944/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Removed most of the "type" classes and moved classes for controlled vocabulary into internal classes. Adapted the mappings file for correct output. |
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From: Kai R. <kr...@us...> - 2003-08-22 02:59:07
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Date: Thursday August 21, 2003 @ 3:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv2132/java/org/psi/ms/converter Modified Files: DtaReader.java Log Message: Removed class ActivationType and made the class ActivationTypeMethodType internal class Activation.Method |
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From: Kai R. <kr...@us...> - 2003-08-22 08:11:41
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Date: Thursday August 21, 2003 @ 7:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv16342/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Optimised imports |
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From: Kai R. <kr...@us...> - 2003-08-28 15:17:20
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Date: Thursday August 28, 2003 @ 8:17 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv19104/src/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Further simplifications of the model. Removed all the castor-specific methods isValid, marshal, unmarshal, validate. |
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From: Kai R. <kr...@us...> - 2003-09-10 12:45:55
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Date: Wednesday September 10, 2003 @ 5:45 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv18910/java/org/psi/ms/converter Modified Files: DtaSetConverter.java Log Message: For simplicity all these "default" values of MzData are set in the MzData constructor. |
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From: Kai R. <kr...@us...> - 2003-09-10 14:51:35
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Date: Wednesday September 10, 2003 @ 7:51 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv11665/src/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: The class DtaReader interprets now the name of the .dta/.zta files parsed. The MzData class sets now admin/sampleName to "" instead of "?". The classes DtaSetConverter and TestDtaReader could be simplified because of the count field changes in the *List classes. |
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From: Kai R. <kr...@us...> - 2003-09-10 16:53:26
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Date: Wednesday September 10, 2003 @ 9:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv7198/java/org/psi/ms/converter Modified Files: DtaSetConverter.java Log Message: Contains now a rudimental main method to create an executable .jar file. |
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From: Kai R. <kr...@us...> - 2003-09-11 15:39:04
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Date: Thursday September 11, 2003 @ 8:38 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv26283 Modified Files: DtaSetConverter.java Added Files: ParseListener.java Log Message: Lawrence added a ParseListener interface for communication with the GUI he's written. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:53:04
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Date: Monday September 15, 2003 @ 5:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv18695 Modified Files: DtaReader.java Log Message: The converter creates only the RawDataType classes, as the output is now configurated by the output class MzDataWriter and not by the data model anymore (which was rubbish anyway). |
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From: Kai R. <kr...@us...> - 2003-09-15 12:54:25
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Date: Monday September 15, 2003 @ 5:54 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv19299 Modified Files: DtaSetConverter.java Log Message: Removed all references to Castor and output configuration references to DtaReader. |
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From: Kai R. <kr...@us...> - 2003-09-17 13:25:51
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Date: Wednesday September 17, 2003 @ 6:25 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv11922/java/org/psi/ms/converter Modified Files: DtaSetConverter.java Log Message: Added the parameter MzDataWriter.OutputType to the method convertDirectory of DtaSetConverter and change ParsingBusiness and TestDtaSetConvert accordingly. |
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From: Kai R. <kr...@us...> - 2003-09-17 15:53:56
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Date: Wednesday September 17, 2003 @ 8:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15130/src/java/org/psi/ms/converter Modified Files: DtaSetConverter.java Log Message: Bugfix: The "busy" message printed only the names of the .dta files. Fixed. |
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From: Kai R. <kr...@us...> - 2003-11-07 18:04:45
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Date: Friday November 7, 2003 @ 10:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15926 Added Files: ConverterI.java Log Message: In order to be accepted as a importer module each converter must implement this interface. |
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From: Kai R. <kr...@us...> - 2003-11-10 10:21:15
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Date: Monday November 10, 2003 @ 2:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15448/java/org/psi/ms/converter Added Files: DtaSetImporter.java ImporterI.java Removed Files: ConverterI.java DtaSetConverter.java Log Message: Renamed: ConverterI -> ImporterI DtaSetConverter -> DtaSetImporter |
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From: Kai R. <kr...@us...> - 2003-11-14 16:49:31
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Date: Friday November 14, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv23169/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetImporter.java Log Message: Re-arranged the model so that it reflects the changes to the XML schema. Implemented the ImporterI interface with the DtaSetImporter. |
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From: Kai R. <kr...@us...> - 2003-11-21 15:25:15
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Date: Friday November 21, 2003 @ 7:25 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv14287 Added Files: ProvidedDataItem.java Log Message: This class defines which data items a importer implementation can provide. |
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From: Kai R. <kr...@us...> - 2003-11-21 15:32:15
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Date: Friday November 21, 2003 @ 7:32 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15820 Modified Files: ImporterI.java Log Message: Added method getAboutImporter() Corrected the JavaDoc for the method getProvidedData() |
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From: Kai R. <kr...@us...> - 2003-11-28 15:46:51
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Date: Friday November 28, 2003 @ 7:46 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv4776 Modified Files: ParseListener.java Log Message: Added the methods "setMax" and "increase" for having more control over the progress bar. |
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