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From: Randy J. <rkj...@us...> - 2003-07-26 11:18:06
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Date: Saturday July 26, 2003 @ 4:17 Author: rkjulian http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv13909/mzData Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData added to the repository |
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From: Randy J. <rkj...@us...> - 2003-07-26 11:19:32
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Date: Saturday July 26, 2003 @ 4:19 Author: rkjulian http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv14232 Added Files: mzdata.xsd Log Message: iniitial version of mzData (revision of 'peaklist') |
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From: Randy J. <rkj...@us...> - 2003-07-28 17:35:08
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Date: Monday July 28, 2003 @ 10:35 Author: rkjulian http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv18837 Modified Files: mzdata.xsd Log Message: Added resolution and accuracy to instrument element |
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From: Randy J. <rkj...@us...> - 2003-08-04 16:54:02
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Date: Monday August 4, 2003 @ 9:54 Author: rkjulian http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv5001 Modified Files: mzdata.xsd Log Message: Updated annotation, cleaned up attributes for list counts and array lengths |
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From: Randy J. <rkj...@us...> - 2003-08-08 18:02:56
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Date: Friday August 8, 2003 @ 11:02 Author: rkjulian http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv5605 Modified Files: mzdata.xsd Log Message: Changed design from mixed to venetian blind |
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From: Kai R. <kr...@us...> - 2003-08-11 16:59:43
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Date: Monday August 11, 2003 @ 9:46 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv1509 Modified Files: mzdata.xsd Log Message: Converted several of the float/int elements into attributes, also some string attributes into elements. |
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From: Kai R. <kr...@us...> - 2003-10-20 10:07:59
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Date: Monday October 20, 2003 @ 2:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv25769 Modified Files: mzdata.xsd Log Message: Change the type of M/Z range from int to float (line 484) Renamed "instrument" to "acqInst" (line 577) Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense) Changed acqID from required to optional (line 633) Removed two empty sequence elements |
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From: Kai R. <kr...@us...> - 2003-11-06 16:02:01
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Date: Thursday November 6, 2003 @ 8:02 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv6405 Modified Files: mzdata.xsd Log Message: Merged the primary and supplement data into one single acqisition element. This simplifies proccessing and conversion of vendor-specific data and also improves the processing of our format. |
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From: Kai R. <kr...@us...> - 2003-11-06 17:18:16
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Date: Thursday November 6, 2003 @ 9:18 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv21696 Modified Files: mzdata.xsd Log Message: renamed desc to acqDesc |
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From: Kai R. <kr...@us...> - 2003-11-07 18:06:40
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Date: Friday November 7, 2003 @ 10:06 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv16244 Modified Files: mzdata.xsd Log Message: Removed several obsolete ID attributes. |
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From: Kai R. <kr...@us...> - 2003-11-14 11:49:34
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Date: Friday November 14, 2003 @ 3:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv31911 Modified Files: mzdata.xsd Log Message: The acquisition ID is no longer necessary. |
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From: Kai R. <kr...@us...> - 2003-11-14 16:51:38
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Date: Friday November 14, 2003 @ 8:51 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv23886 Modified Files: mzdata.xsd Log Message: -one acqDesc element per acquisition -several dataArray/dataArrayBinary available -dataArray and datArrayBinary get an attribute ID and supDesc's ID attribute gets changed into a ref attribute |
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From: Kai R. <kr...@us...> - 2004-07-27 10:26:40
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Date: Tuesday July 27, 2004 @ 3:26 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26652 Modified Files: mzdata.xsd Log Message: Added Randall's suggestions after the Carros meeting: -removed the required attributes in the instrument's section. They are now in the CV controlled element instrParam, which is much more flexible for future extension regarding new instruments. -also removed the choice between an explicit, element-base, display of the m/z data and the base64 display of this data. |
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From: Kai R. <kr...@us...> - 2004-07-30 14:57:53
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Date: Friday July 30, 2004 @ 7:57 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv24983 Modified Files: mzdata.xsd Log Message: The fruits of the jamboree at the EBI July 26-30: It uses a variant of Randy's all-attribute CV elements, and has had all but the most simple enumerations removed. The structure is somewhere between the post-Nice version and the 'all attribute' variant recently sent round by Randy. |
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From: Kai R. <kr...@us...> - 2004-08-02 12:19:02
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Date: Monday August 2, 2004 @ 5:18 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28605 Added Files: example.xml Log Message: Example file valid to version 1.00 |
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From: Kai R. <kr...@us...> - 2004-08-02 12:22:37
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Date: Monday August 2, 2004 @ 5:22 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv29258 Modified Files: mzdata.xsd Log Message: analyzer -- now unbounded analyzerList -- added 'count' attribute acqSpecification -- added 'count' attribute acq -- renamed 'acquisition', moved, made into an extension of 'paramType' and added attrib 'acquisitionNumber' range and list both deleted acqInstrument -- made mzRangeStart/Stop optional acqTime -- deleted (expected to be from CV now) |
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From: Kai R. <kr...@us...> - 2004-08-05 12:46:53
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Date: Thursday August 5, 2004 @ 5:46 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv17982 Modified Files: mzdata.xsd Log Message: Made additional params optional. |
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From: Kai R. <kr...@us...> - 2004-08-05 12:47:40
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Date: Thursday August 5, 2004 @ 5:47 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18081 Modified Files: example.xml Log Message: Updated the example to be valid with version 1.03 |
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From: Kai R. <kr...@us...> - 2004-08-05 12:49:43
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Date: Thursday August 5, 2004 @ 5:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18352 Added Files: psi-ms-cv.owl Log Message: First version of an PSI mass spec ontology. |
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From: Kai R. <kr...@us...> - 2004-08-11 13:17:32
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Date: Wednesday August 11, 2004 @ 6:17 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23846 Modified Files: mzdata.xsd Log Message: * dataArray -> added type 'double' to the choice * supDesc -> added attrib 'supDataArrayRef' (missing!) * mzArrayBinaryType -> renamed peakListBinaryType (it does intensities too so the name was innappropriate) * binaryDataGroup:data -> added attrib 'endian' (by request) * dataArray (+dataArrayBinary) -> renamed supDataArray(Binary) * software:description -> renamed 'comment' * Chris has been through the schema and where only a little free text was required he has used 'comment' - a simple text field; where more was needed he has employed 'description' - descriptionType is an implementation of paramType with an extra 'comment' attribute on the parent element of the structure iyswim * (potentially controversial) Chris has added a descriptionType element called 'sampleDescription' to admin (partly for any old detail, but also in case people want to shove in (e.g.) LC data somewhere, somehow, in advance of a more developed 'wrapping' schema [i.e. PSI-OM]). * acquisitionList + acquisition (the one directly under it) + acquisitionType renamed as 'spectrumList', 'spectrum' and 'spectrumType' respectively (partly dual use of language, partly a parser-related issue). * Fixed some other mini bugs; there are bound to be more though -- please try to find them before Bruker, Kratos and Matrix Science do (e.g. internal consistency, multiplicities, poor/legacy annotation [including attributes], poor naming, redundancy, incorrect capitalisation, structures open to misinterpretation etc.). |
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From: Kai R. <kr...@us...> - 2004-08-11 13:20:27
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Date: Wednesday August 11, 2004 @ 6:20 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv24438 Modified Files: mzdata.xsd Log Message: Fixed the glitch dateTime -> float. |
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From: Kai R. <kr...@us...> - 2004-10-04 08:43:53
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Date: Monday October 4, 2004 @ 1:43 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1525 Modified Files: example.xml Log Message: The example file is now compatible with mzdata.xsd,v 1.18 2004/09/30 14:52:27 |
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From: Kai R. <kr...@us...> - 2004-10-04 08:47:53
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Date: Monday October 4, 2004 @ 1:47 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2179 Added Files: mzdata.html Log Message: Documentation for mzdata.xsd,v 1.18 2004/09/30 14:52:27 |
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From: Chris T. <chr...@us...> - 2005-01-04 12:12:25
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Date: Tuesday January 4, 2005 @ 4:12 Author: chrisftaylor http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv31417/psi-ms/xml/mzData Modified Files: mzdata.xsd Log Message: The re-annotated version of the mzData schema. The intention is to remove any ambiguities in definitions. Some other minor code tweaks and renamings have also occurred. |
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From: Kai R. <kr...@us...> - 2005-01-10 08:23:50
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Date: Monday January 10, 2005 @ 0:23 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21371 Modified Files: mzdata.xsd Log Message: The documentation generator xs3p doesn't like the double dashes "--", I removed them. |
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