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psidev-mi-cvs
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From: luisa m. <lui...@us...> - 2008-05-13 12:23:13
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Date: Tuesday May 13, 2008 @ 5:23 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv15746/mi/rel25/data Modified Files: LASTAC psi-mi25.obo Log Message: - format has been upgraded from OBO1.0 to OBO1.2 format - taking advantage of the 1.2 format, two synonym types as been created 'short label' and 'alternate name' (see definitions in the header) - terms can now belong to different subsets also defined in the header one being the 'usual' PSI-MI (called PSI-MI slim) and a new set of terms dedicated to drug-target interactions (called Drugable) - !!!!warning!!!! Note one term (heavily used) term has been obsoleted MI:0218 physical interaction, it is now replaced by two terms with more fine grained meaning: association (or affinity complex) and physical association (more functional complex). For bulk remapping a possible criteria can be: whatever physical interaction that has among its participants a bait should become 'association' MI:0914 the others can become 'physical association' MI:0915. Two hybrid interactions are an expection and can be 'physical association' MI:0915. I have just released the obo file for PSI-MI activities covering the following tracker issues: 1945124 AlphaScreen 1941929 udape url of pirsf 1935512 AU1 tag 1931436 experimental prep, new exp role heat shock prot 1893514 lexa vp16 1893511 This should be lexa b42 complementation 1887958 Ribonuclease 1881298 interaction detection: mass spectrometry 1748485 crosslinkers as PTM 1710745 association/physical/direct I also added other terms from informal requests I received and was dicussed during the PSI meeting : - addition of databases MBIDB, matrixdb, iRefIndex - addition of polysaccaride as interactor type - addition of 103 terms dedicated to drugs |
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From: luisa m. <lui...@us...> - 2008-05-16 14:09:11
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Date: Friday May 16, 2008 @ 7:08 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19741/mi/rel25/data Modified Files: psi-mi25.obo Log Message: error fixing on the Xref of MI:0911 and MI:0853 |
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From: luisa m. <lui...@us...> - 2008-05-16 14:14:13
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Date: Friday May 16, 2008 @ 7:14 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21845/mi/rel25/data Modified Files: psi-mi25.obo Log Message: error fixing on the Xref of MI:0911 and MI:0853, and xrefs on drug dataset replace 'pubmed' by 'PMID:' |
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From: luisa m. <lui...@us...> - 2008-05-16 14:29:00
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Date: Friday May 16, 2008 @ 7:28 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28315/mi/rel25/data Modified Files: psi-mi25.obo Log Message: error fixing MI:02013 obsolete as redundant with MI:0730, short label editing on MI:0717 and MI:0852. |
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From: luisa m. <lui...@us...> - 2008-05-27 17:41:36
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Date: Tuesday May 27, 2008 @ 10:41 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10761/mi/rel25/data Modified Files: psi-mi25.obo Log Message: Minor fixing on synonyms of MI:2046 and definition of MI:0867 |
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From: luisa m. <lui...@us...> - 2008-05-29 10:27:01
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Date: Thursday May 29, 2008 @ 3:26 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv29689/mi/rel25/data Modified Files: psi-mi25.obo Log Message: Minor fixing on MI:2127 |
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From: luisa m. <lui...@us...> - 2008-06-18 10:18:38
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Date: Wednesday June 18, 2008 @ 3:18 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv6142/mi/rel25/data Modified Files: psi-mi25.obo Log Message: MInor fixing: addition of existing terms to the drugable subset, addition of short labels synonyms. |
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From: luisa m. <lui...@us...> - 2008-06-18 10:41:27
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Date: Wednesday June 18, 2008 @ 3:41 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv14725/mi/rel25/data Modified Files: psi-mi25.obo Log Message: MInor fixing: removed unimod reference on MI:0832 |
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From: luisa m. <lui...@us...> - 2008-06-18 14:51:57
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Date: Wednesday June 18, 2008 @ 7:51 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12116/mi/rel25/data Modified Files: psi-mi25.obo Log Message: MInor fixing: existing terms added to the drugable subset. |
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From: luisa m. <lui...@us...> - 2008-07-14 11:26:34
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Date: Monday July 14, 2008 @ 4:26 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv31145/mi/rel25/data Modified Files: LASTAC psi-mi25.obo Log Message: 11 new terms added MI:0924 to MI:0935 fixing related to sourceforge tracker items : 2008832 move some druggability terms under CVparameter 2008823 new annotation topic 'observed ptm' 2008820 new genetic interaction types (the one Gary Bader sent) 2007986 FIAsH 2007850 IAEDANS label 1995981 move fluroscent acceptor donor pair to experimental role 1992040 original identifier/original databse. 1990736 definition imex-primary 1963117 Interaction detection method: Filter retardation assay 1962333 Northern blot - and change to parent see https://sourceforge.net/tracker/index.php?group_id=65472&atid=612426 |
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From: luisa m. <lui...@us...> - 2008-07-14 11:42:05
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Date: Monday July 14, 2008 @ 4:42 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4420/mi/rel25/data Modified Files: psi-mi25.obo Log Message: MI:0802 obsoleted 11 new terms added MI:0924 to MI:0935 fixing related to sourceforge tracker items : 2008832 move some druggability terms under CVparameter 2008823 new annotation topic 'observed ptm' 2008820 new genetic interaction types (the one Gary Bader sent) 2007986 FIAsH 2007850 IAEDANS label 1995981 move fluroscent acceptor donor pair to experimental role 1992040 original identifier/original databse. 1990736 definition imex-primary 1963117 Interaction detection method: Filter retardation assay 1962333 Northern blot - and change to parent see https://sourceforge.net/tracker/index.php?group_id=65472&atid=612426 |
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From: luisa m. <lui...@us...> - 2008-07-14 11:55:11
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Date: Monday July 14, 2008 @ 4:55 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9698/mi/rel25/data Modified Files: psi-mi25.obo Log Message: MI:0802 obsoleted 11 new terms added MI:0924 to MI:0935 fixing related to sourceforge tracker items : 2008832 move some druggability terms under CVparameter 2008823 new annotation topic 'observed ptm' 2008820 new genetic interaction types (the one Gary Bader sent) 2007986 FIAsH 2007850 IAEDANS label 1995981 move fluroscent acceptor donor pair to experimental role 1992040 original identifier/original databse. 1990736 definition imex-primary 1963117 Interaction detection method: Filter retardation assay 1962333 Northern blot - and change to parent see https://sourceforge.net/tracker/index.php?group_id=65472&atid=612426 |
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From: luisa m. <lui...@us...> - 2008-07-28 17:54:58
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Date: Monday July 28, 2008 @ 10:54 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18321/mi/rel25/data Modified Files: psi-mi25.obo Log Message: Added 2 terms for genetic interaction classification, MI:0930 and MI:0931 and also renamed most or previously created genetic interactions |
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From: luisa m. <lui...@us...> - 2009-05-20 14:12:26
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Date: Wednesday May 20, 2009 @ 14:00 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9415/mi/rel25/data Modified Files: psi-mi25.obo Log Message: 30 new terms added following the discussing at the Turku PSI meeting |
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From: luisa m. <lui...@us...> - 2009-06-12 18:15:16
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Date: Friday June 12, 2009 @ 18:15 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv18144/mi/rel25/data Modified Files: psi-mi25.obo Log Message: Terms addition following the PSI Turku meeting (april 2009) and correction to the header including the version number. |
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From: Samuel K. <ske...@us...> - 2010-05-10 12:44:45
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Date: Monday May 10, 2010 @ 12:44 Author: skerrien http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv7448 Modified Files: psi-mi25.obo Log Message: updated CVs |
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From: Samuel K. <ske...@us...> - 2010-05-14 15:28:41
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Date: Friday May 14, 2010 @ 15:28 Author: skerrien http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv16030 Modified Files: psi-mi25.obo Log Message: removed Xref looking like XX:<new dbxref> |
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From: Samuel K. <ske...@us...> - 2010-11-12 09:53:30
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Date: Friday November 12, 2010 @ 9:53 Author: skerrien http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv12044 Modified Files: psi-mi25.obo Log Message: new PSI-MI CVs release |
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From: Samuel K. <ske...@us...> - 2010-11-26 10:29:04
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Date: Friday November 26, 2010 @ 10:28 Author: skerrien http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv28049 Modified Files: psi-mi25.obo Log Message: BUGFIX - removed a number of badly formatted Xref and synonym left behind by OBO-Edit |
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From: Marine D. <ma...@us...> - 2013-01-29 13:50:22
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Date: Tuesday January 29, 2013 @ 13:50 Author: marine3 http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv27241 Modified Files: psi-mi25.obo Log Message: PSI-MI OBO Update |
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From: rajido <ra...@us...> - 2013-02-26 13:48:12
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Date: Tuesday February 26, 2013 @ 13:48 Author: rajido http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv23844 Modified Files: psi-mi25.obo Log Message: PSI-MI OBO Update |
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From: rajido <ra...@us...> - 2013-03-06 10:00:25
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Date: Wednesday March 6, 2013 @ 10:00 Author: rajido http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv7933 Modified Files: psi-mi25.obo Log Message: PSI-MI OBO Update |
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From: rajido <ra...@us...> - 2013-06-06 12:54:34
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Date: Thursday June 6, 2013 @ 12:54 Author: rajido http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv21742 Modified Files: psi-mi25.obo Log Message: PSI-MI OBO Update |
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From: rajido <ra...@us...> - 2013-06-06 13:01:12
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Date: Thursday June 6, 2013 @ 13:01 Author: rajido http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv21985 Modified Files: psi-mi25.obo Log Message: PSI-MI OBO Update |
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From: Marine D. <ma...@us...> - 2014-01-21 09:11:22
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Date: Tuesday January 21, 2014 @ 9:11 Author: marine3 http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv26101 Modified Files: psi-mi25.obo Log Message: PSI-MI OBO Update |
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