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From: gabbyreeves <gab...@us...> - 2008-03-20 11:43:56
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Date: Thursday March 20, 2008 @ 4:43 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1929 Modified Files: biosapiens_lite.xml Log Message: Addition of these terms into SO. Update into biosapiens_lite.xml id: SO:0100014 name: n_terminal_region def: "The amino-terminal positively-charged region of the signal peptide (aprox 1-5 aa)." [EBIBS:GAR] id: SO:0100015 name: c_terminal_region def: "The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR] id: SO:0100016 name: central_hydrophobic_region def: "The central, hydrophobic region of the signal peptide (aprox 7-15 aa)." [EBIBS:GAR] [CVS: ---------------------------------------------------------------------- |
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From: gabbyreeves <gab...@us...> - 2008-03-20 11:43:21
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Date: Thursday March 20, 2008 @ 4:43 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1540 Modified Files: biosapiens_lite.obo Log Message: Addition of these terms into SO --> changes updtated in biosapiens.obo and biosapiens_lite.obo d: SO:0100014 name: n_terminal_region def: "The amino-terminal positively-charged region of the signal peptide (aprox 1-5 aa)." [EBIBS:GAR] id: SO:0100015 name: c_terminal_region def: "The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR] id: SO:0100016 name: central_hydrophobic_region def: "The central, hydrophobic region of the signal peptide (aprox 7-15 aa)." [EBIBS:GAR] [CVS: ---------------------------------------------------------------------- |
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From: gabbyreeves <gab...@us...> - 2008-03-20 11:42:30
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Date: Thursday March 20, 2008 @ 4:42 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv695 Modified Files: biosapiens.obo Log Message: Addition of terms into SO - updated in biosapiens id: SO:0100014 name: n_terminal_region def: "The amino-terminal positively-charged region of the signal peptide (aprox 1-5 aa)." [EBIBS:GAR] id: SO:0100015 name: c_terminal_region def: "The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR] id: SO:0100016 name: central_hydrophobic_region def: "The central, hydrophobic region of the signal peptide (aprox 7-15 aa)." [EBIBS:GAR] [ |
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From: gabbyreeves <gab...@us...> - 2008-03-17 10:45:54
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Date: Monday March 17, 2008 @ 3:45 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30805 Modified Files: biosapiens_lite.xml Log Message: Incorporating new terms addition (coil and hydrophobic_region) from SO. |
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From: gabbyreeves <gab...@us...> - 2008-03-17 10:45:33
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Date: Monday March 17, 2008 @ 3:45 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30782 Modified Files: biosapiens_lite.obo Log Message: Incorporating new terms addition (coil and hydrophobic_region) from SO. |
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From: gabbyreeves <gab...@us...> - 2008-03-17 10:43:30
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Date: Monday March 17, 2008 @ 3:43 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30026 Modified Files: biosapiens.obo Log Message: Incorporating new terms addition (coil and hydrophobic_region) from SO. |
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From: gabbyreeves <gab...@us...> - 2008-03-11 10:47:31
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Date: Tuesday March 11, 2008 @ 3:47 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv3119 Added Files: biosapiens_lite.xml Log Message: xml version of the biosapiens lite. |
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From: gabbyreeves <gab...@us...> - 2008-03-10 16:23:21
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Date: Monday March 10, 2008 @ 9:23 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv11887 Modified Files: biosapiens_lite.obo Log Message: Addition of order into the comments field. Removal of all other comments. |
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From: gabbyreeves <gab...@us...> - 2008-03-10 16:22:35
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Date: Monday March 10, 2008 @ 9:22 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv11511 Modified Files: biosapiens.obo Log Message: removal of double parent branch binding_site. All children under this parent are now only under molecular_contact_region |
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From: gabbyreeves <gab...@us...> - 2008-03-06 14:47:22
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Date: Thursday March 6, 2008 @ 6:40 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19796 Added Files: mapping_table_uniprot_ontology.csv Log Message: mapping file between uniprot feature types and ontology terms. |
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From: gabbyreeves <gab...@us...> - 2008-03-06 12:00:58
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Date: Thursday March 6, 2008 @ 4:00 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21978 Added Files: biosapiens_lite.obo Log Message: addition of lite version of biosapiens ontology. |
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From: Lukasz S. <lu...@mb...> - 2008-03-03 01:56:05
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Hello, I've just noticed - what is/was rationale behind making EMSA (electrophoretic mobility shift assay) a solid phase assay ? what would be solid phase in this case ? confusedly, l -- ------------------------------------------------------------------------- Lukasz Salwinski PHONE: 310-825-1402 UCLA-DOE Institute for Genomics & Proteomics FAX: 310-206-3914 UCLA, Los Angeles EMAIL: lu...@mb... ------------------------------------------------------------------------- |
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From: Samuel K. <ske...@us...> - 2008-02-14 11:18:53
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Date: Thursday February 14, 2008 @ 3:18 Author: skerrien http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/src Update of /cvsroot/psidev/psi/mi/rel25/src In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8818/mi/rel25/src Added Files: MIF254.xsd Log Message: Updated by Bruno Aranda during the Tokyo Bio-Hackathon (Feb. 2008) |
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From: luisa m. <lui...@us...> - 2008-02-13 18:16:21
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Date: Wednesday February 13, 2008 @ 10:15 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv20478/mi/rel25/data Modified Files: psi-mi25.obo Log Message: Update February 2007- 4 new terms + obsoletion of DNA footprinting +minor fixing of URLs +minor fixing in the header |
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From: luisa m. <lui...@us...> - 2008-02-13 18:16:15
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Date: Wednesday February 13, 2008 @ 10:13 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19435/mi/rel25/data Modified Files: LASTAC psi-mi25.obo Log Message: Update February 2007- 4 new terms + obsoletion of DNA footprinting +minor fixing of URLs |
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From: gabbyreeves <gab...@us...> - 2008-01-31 16:11:17
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Date: Thursday January 31, 2008 @ 8:11 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30824 Modified Files: biosapiens.obo Log Message: automatic update |
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From: gabbyreeves <gab...@us...> - 2008-01-23 11:30:39
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Date: Wednesday January 23, 2008 @ 3:30 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv17839 Modified Files: biosapiens.obo Log Message: updating terms added to SO |
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From: David G. <dav...@us...> - 2007-12-30 16:02:00
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Date: Sunday December 30, 2007 @ 8:02 Author: davidgloriam http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/proteomeBinder Update of /cvsroot/psidev/psi/mi/controlledVocab/proteomeBinder In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12340 Modified Files: protein-binder.obo Log Message: |
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From: luisa m. <lui...@us...> - 2007-12-20 14:13:21
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Date: Thursday December 20, 2007 @ 6:12 Author: luisa_montecchi http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data Update of /cvsroot/psidev/psi/mi/rel25/data In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13662/mi/rel25/data Modified Files: LASTAC psi-mi25.obo Log Message: 12 new terms added mainly on tags, interaction detection method, and a new experimental role. |
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From: gabbyreeves <gab...@us...> - 2007-12-03 14:43:31
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Date: Monday December 3, 2007 @ 6:43 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21908 Modified Files: biosapiens.obo Log Message: automatic update |
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From: gabbyreeves <gab...@us...> - 2007-12-03 14:42:32
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Date: Monday December 3, 2007 @ 6:42 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21553 Modified Files: biosapiens.obo Log Message: automatic update |
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From: gabbyreeves <gab...@us...> - 2007-12-03 13:17:46
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Date: Monday December 3, 2007 @ 5:17 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23538 Modified Files: biosapiens.obo Log Message: automatic update |
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From: gabbyreeves <gab...@us...> - 2007-11-29 17:38:08
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Date: Thursday November 29, 2007 @ 9:38 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv29924 Modified Files: biosapiens.obo Log Message: automatic update |
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From: gabbyreeves <gab...@us...> - 2007-11-29 17:10:54
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Date: Thursday November 29, 2007 @ 9:10 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv20357 Modified Files: biosapiens.obo Log Message: automatic update |
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From: gabbyreeves <gab...@us...> - 2007-11-29 16:17:24
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Date: Thursday November 29, 2007 @ 8:17 Author: gabbyreeves http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/controlledVocab/biosapiens Update of /cvsroot/psidev/psi/mi/controlledVocab/biosapiens In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1241 Modified Files: biosapiens.obo Log Message: automatic update |
