[Psidev-qc-dev] Schedule PSI Spring Meeting 2021

[Wout B. <wbi...@he...>]

Dear colleagues,

Please find below the latest schedule for the QC track during the PSI 
2021 Spring Meeting.

Notable changes are that we will have a joint session with the MS 
working group on Monday morning to discuss affinity-based workflows. 
These are new proteomics technologies (non-mass spec based) for which 
the idea is to build QC in on the ground floor, so they will certainly 
be able to benefit from our input.

I have also included some additional details for the other sessions 
where I think it would be useful to hear from specific people. Please 
consult the schedule below and maybe prepare a little bit if necessary. 
Feel free to reply to the mailing list, or even better on Slack during 
the meeting for faster communication.

I am looking forward to seeing you all this week!

Best,
Wout

------------------------------------------------------------------------


*Schedule*


*Monday Session 1 - 8:00am PDT, 15:00 GMT, 16:00 CET*

*Topic:* 30 min Welcome and Introductions (Eric Deutsch)

*Zoom:* 
https://us02web.zoom.us/j/87431822456?pwd=VFRsOWxadk9UVUJ3dzF6OHgwckdQdz09 
<https://us02web.zoom.us/j/87431822456?pwd=VFRsOWxadk9UVUJ3dzF6OHgwckdQdz09> 
(password: hupopsi)

*Topic:* Affinity-based Workflows

*Zoom:* 
https://isbscience.zoom.us/j/92759368718?pwd=TlpJZ0NoRit6WFp0TjFCamtOM1RpZz09 
<https://isbscience.zoom.us/j/92759368718?pwd=TlpJZ0NoRit6WFp0TjFCamtOM1RpZz09>

5 min Welcome

15 min Ida Grundberg – Olink

15 min Sheri Wilcox – Somalogic

15 min Anita Bandrowski – The Antibody Registry

40 min Open Discussion


One hour break


*Monday Session 2 - 11:00a**m**PDT, 18:00 GMT, 19:00 CET*

*Topic:* Discussion of current and future mzQC implementations

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- Welcome and Introductions (Dave Tabb)

- mzQC in Python: mzqc-pylib (Mathias Walzer)

- mzQC in R (Chris Bielow)

- mzQC in C# (Paul Brack)

- mzQC support in higher-level tools

- mzQC online validator

- Status of the libraries, future developments, and alternative 
programming languages.


---


*Tuesday Session 3 - 8:00am PDT, 15:00 GMT, 16:00 CET*

*Topic:* mzQC specification document

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- Current status of the specification document and the review process 
(Mathias Walzer)

- Everyone: consult the specification document in advance! 
https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit 
<https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit>


One hour break


*Tuesday Session 4 - 11:00am PDT, 18:00 GMT, 19:00 CET*

*Topic:* mzQC specification document

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- Status of the CV and future developments (Julian Uszkoreit)

- Example files in specification document appendix (Mathias Walzer, 
Chris Bielow, Wout Bittremieux)


---


*Wednesday Session 5 - 8:00am PDT, 15:00 GMT, 16:00 CET*

40 min *Plenary session*: The Complex Portal - Birgit Meldal

*Zoom: 
*https://us02web.zoom.us/j/87431822456?pwd=VFRsOWxadk9UVUJ3dzF6OHgwckdQdz09 
<https://us02web.zoom.us/j/87431822456?pwd=VFRsOWxadk9UVUJ3dzF6OHgwckdQdz09> 
(password: hupopsi)

*Topic:* mzQC / MIAPE-QC manuscript

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- Outline of the manuscript (Wout Bittremieux)

- Collect use cases to demonstrate mzQC (everyone)


One hour break


*Wednesday Session 6 - 11:00am PDT, 18:00 GMT, 19:00 CET*

*Topic:* mzQC / MIAPE-QC manuscript

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- Continued from the morning session

- Deeper discussion on MIAPE-QC (everyone)


---


*Thursday Session 7 - 8:00am PDT, 15:00 GMT, 16:00 CET*

*Topic:* PSI Semantic Metabolomics

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- Semantic Metabolomics (Steffen Neuman, Timo Sachsenberg)

- How to engage the metabolomics community? (Reza Salek)


One hour break


*Thursday Session 8 - 11:00am PDT, 18:00 GMT, 19:00 CET*

*Topic:* Identify future projects to which MS QC can contribute

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)

- mzQC for top-down (Dave Tabb)

- Link with SDRF-Proteomics (Yasset?)


---


*Friday Session 9 - 8:00am PDT, 15:00 GMT, 16:00 CET*

60 min *Plenary Session*- Work Group summaries

60 min Cross WG sessions

*Zoom: 
*https://us02web.zoom.us/j/87431822456?pwd=VFRsOWxadk9UVUJ3dzF6OHgwckdQdz09 
<https://us02web.zoom.us/j/87431822456?pwd=VFRsOWxadk9UVUJ3dzF6OHgwckdQdz09> 
(password: hupopsi)


One hour break


*Friday Session 10 - 11:00am PDT, 18:00 GMT, 19:00 CET*

Topic: Flexible time for incomplete previous work

*Zoom:* https://embl-de.zoom.us/j/97793628177 
<https://embl-de.zoom.us/j/97793628177> (password: 667604)