[Psidev-ms-dev] Release candidate 4.1.28_rc1 of psi-ms.obo

[Gerhard M. <may...@ru...>]

Dear proteomics/metabolomics community,

following the new terms for the release candidate 4.1.28_rc1
of the psi-ms.obo file.


New CV terms in version 4.1.28_rc1 of psi-ms.obo:
=================================================
************ New terms for OpenPepXL
[Term]
id: MS:1003023
name: OpenPepXL
def: "Cross-Linking MS search engine." [PSI:PI]
is_a: MS:1000752 ! TOPP software

[Term]
id: MS:1003024
name: OpenPepXL:score
def: "The OpenPepXL score for a cross-link spectrum match." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:1001153 ! search engine specific score
relationship: has_order MS:1002108 ! higher score better

[Term]
id: MS:1003025
name: named element
def: "A named element that is an attribute in a proteomics standards 
file." [PSI:PI]
relationship: part_of MS:0000000 ! Proteomics Standards Initiative Mass 
Spectrometry Vocabularies

[Term]
id: MS:1003026
name: named element in mzIdentML
def: "A named element that is an attribute in a mzIdentML file." [PSI:PI]
is_a: MS:1003025 ! named element

[Term]
id: MS:1003027
name: named element in mzML
def: "A named element that is an attribute in a mzML file." [PSI:PI]
is_a: MS:1003025 ! named element


Changed CV terms in version 4.1.28_rc1 of psi-ms.obo:
=====================================================
************ Added 'is_a: MS:1003026 ! named element in mzIdentML'
[Term]
id: MS:1003021
name: Fixed modification
def: "Post-translational modification which is assumed to be present at 
each instance of a residue type." [PSI:PI]
is_a: MS:1001055 ! modification parameters
is_a: MS:1003026 ! named element in mzIdentML

[Term]
id: MS:1003022
name: Variable modification
def: "Post-translational modification which may or may not be present at 
a residue type." [PSI:PI]
is_a: MS:1001055 ! modification parameters
is_a: MS:1003026 ! named element in mzIdentML

Best Regards,
Gerhard